Rule | AgBase | ARUK-UCL | BHF-UCL | CACAO | CAFA | cgd | CollecTF | ComplexPortal | dictybase | DisProt | ecocyc | Ensembl | EnsemblFungi | FlyBase | GDB | GeneDB | genedb_tbrucei | GO_Central | GOC | GOC-OWL | HGNC | HGNC-UCL | IntAct | InterPro | japonicusdb | mgi | ParkinsonsUK-UCL | PHI-base | PINC | pombase | pseudocap | reactome | rgd | RHEA | RNAcentral | sgd | sgn | SynGO | SYSCILIA_CCNET | tair | TIGR | UniProt | wb | xenbase | zfin |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
GAF lines are parsed according to GAF 2.2 specifications: gorule-0000001 |
0 | 0 | 0 | 0 | 0 | 0 | 0 | 1316 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 21 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 5 | 1739 | 3 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 10 | 1 |
No 'NOT' annotations to 'protein binding ; GO:0005515': gorule-0000002 |
2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
IEP and HEP usage is restricted to terms from the Biological Process ontology: gorule-0000006 |
0 | 0 | 0 | 0 | 0 | 6 | 2 | 0 | 0 | 6 | 21 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 21 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
IPI should not be used with GO:0003824 catalytic activity or descendents: gorule-0000007 |
0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
No annotations should be made to uninformative high level terms: gorule-0000008 |
49 | 0 | 0 | 0 | 0 | 7074 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 50 | 0 | 367 | 0 | 12860 | 275 | 0 | 0 | 0 | 0 | 48 | 0 | 34 | 0 | 0 | 2 | 6 | 22 | 39 | 0 | 0 | 0 | 3 | 16 | 0 | 0 | 711 | 7 | 1169 | 21 | 0 | 0 |
ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND: gorule-0000011 |
0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 18 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Taxon-appropriate annotation check: gorule-0000013 |
4 | 0 | 0 | 4 | 0 | 53 | 0 | 8 | 0 | 1 | 5 | 143 | 0 | 155 | 0 | 2 | 0 | 7159 | 0 | 0 | 0 | 0 | 0 | 17 | 0 | 4 | 0 | 0 | 0 | 0 | 2 | 889 | 1 | 0 | 0 | 1 | 0 | 2 | 0 | 15 | 0 | 94 | 69 | 0 | 6 |
Dual species taxon check: gorule-0000015 |
0 | 5 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 44 | 0 | 0 | 0 |
With/From: IC annotations require a With/From GO ID: gorule-0000016 |
0 | 0 | 4 | 0 | 0 | 0 | 0 | 23 | 0 | 0 | 36 | 0 | 0 | 6 | 0 | 23 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6 | 0 | 0 | 0 | 0 | 127 | 0 | 0 | 0 |
IDA annotations must not have a With/From entry: gorule-0000017 |
0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 5 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
IPI annotations require a With/From entry: gorule-0000018 |
0 | 0 | 0 | 0 | 0 | 0 | 0 | 2904 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 29 | 0 | 0 | 7 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 6 | 0 | 1 | 0 | 0 | 0 |
Automatic repair of annotations to merged or obsoleted terms: gorule-0000020 |
3 | 24 | 24 | 2 | 5 | 10000 | 0 | 134 | 0 | 0 | 5 | 427 | 0 | 34 | 0 | 1607 | 0 | 1531 | 42 | 0 | 0 | 1 | 0 | 132 | 0 | 0 | 33 | 0 | 5 | 4 | 227 | 188 | 6 | 38 | 1 | 55 | 113 | 0 | 0 | 73 | 26 | 357 | 105 | 0 | 159 |
Each identifier in GAF is valid: gorule-0000027 |
0 | 0 | 0 | 0 | 0 | 0 | 154 | 0 | 0 | 0 | 0 | 0 | 1973 | 15 | 57 | 0 | 0 | 0 | 0 | 35 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 162 | 0 | 0 | 0 | 0 | 0 | 0 |
Aspect can only be one of C, P, F and should be repaired using the GO term: gorule-0000028 |
0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
IEAs should be less than one year old.: gorule-0000029 |
0 | 0 | 0 | 0 | 0 | 10000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6326 | 0 | 0 | 144 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 14 | 0 | 0 | 0 | 59 | 0 | 0 | 0 | 0 | 0 | 0 | 8341 | 0 | 0 | 0 |
Deprecated GO_REFs are not allowed: gorule-0000030 |
0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
IBA annotations should ONLY be assigned_by GO_Central and have PMID:21873635 as a reference: gorule-0000037 |
0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants: gorule-0000039 |
0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Qualifier: IKR evidence code requires a NOT qualifier: gorule-0000042 |
0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Check for valid combination of evidence code and GO_REF: gorule-0000043 |
0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms.: gorule-0000046 |
50 | 29 | 94 | 0 | 61 | 91 | 0 | 0 | 5 | 0 | 364 | 2099 | 0 | 67 | 0 | 24 | 0 | 2030 | 0 | 0 | 3 | 26 | 0 | 865 | 0 | 989 | 7 | 0 | 0 | 0 | 0 | 0 | 941 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 1880 | 6 | 0 | 83 |
Annotations to ISS, ISA and ISO should not be self-referential: gorule-0000050 |
0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 0 |
References should have only one ID per ID space: gorule-0000055 |
0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 194 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 132 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Group specific filter rules should be applied to annotations: gorule-0000057 |
0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Object extensions should conform to the extensions-patterns.yaml file in metadata: gorule-0000058 |
0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
GAF Version 2.0 and 2.1 are converted into GAF Version 2.2: gorule-0000059 |
0 | 0 | 0 | 2 | 0 | 10000 | 0 | 0 | 2412 | 1 | 0 | 0 | 0 | 0 | 0 | 29941 | 0 | 2184 | 115 | 0 | 0 | 0 | 10 | 1780 | 0 | 0 | 0 | 0 | 0 | 0 | 3726 | 0 | 0 | 138 | 0 | 0 | 1458 | 0 | 0 | 0 | 0 | 3358 | 0 | 0 | 0 |
Allowed gene product to term relations (gp2term): gorule-0000061 |
34 | 898 | 553 | 359 | 9 | 6338 | 0 | 4846 | 2295 | 1 | 77 | 1068 | 2 | 300 | 0 | 0 | 0 | 4594 | 53 | 0 | 3 | 11 | 0 | 339 | 1 | 2206 | 16 | 0 | 4 | 14 | 0 | 4380 | 4050 | 0 | 7 | 5818 | 0 | 0 | 0 | 448 | 11 | 5518 | 71 | 0 | 2671 |
Other |
0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |