GORULE violations assigned by GeneDB


Contents

gorule-0000001 Expecting a known ECO GAF code, e.g ISS

gorule-0000008 GORULE:0000008: No annotations should be made to uninformatively high level terms

gorule-0000011 GORULE:0000011: ND annotations to root nodes only

gorule-0000013 GORULE:0000013: Taxon-appropriate annotation check

gorule-0000016 GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column

gorule-0000018 GORULE:0000018: IPI annotations require a With/From entry

gorule-0000020 Violates GORULE:0000020, but was repaired

gorule-0000029 GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed

gorule-0000046 GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms

gorule-0000055 GORULE:0000055: References should have only one ID per ID space

gorule-0000059 GORULE:0000059 Upgrading qualifier/relation to BFO:0000050 when reading GAF 2.1



MESSAGES

gorule-0000001

Expecting a known ECO GAF code, e.g ISS

messages

gorule-0000008

GORULE:0000008: No annotations should be made to uninformatively high level terms

messages

gorule-0000011

GORULE:0000011: ND annotations to root nodes only

messages

gorule-0000013

GORULE:0000013: Taxon-appropriate annotation check

messages

gorule-0000016

GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column

messages

gorule-0000018

GORULE:0000018: IPI annotations require a With/From entry

messages

gorule-0000020

Violates GORULE:0000020, but was repaired

messages

gorule-0000029

GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed

messages