GORULE violations assigned by pombase

Contents

gorule-0000001 GAF lines are parsed according to GAF 2.2 specifications

gorule-0000008 No annotations should be made to uninformative high level terms

gorule-0000013 Taxon-appropriate annotation check

gorule-0000016 With/From: IC annotations require a With/From GO ID

gorule-0000018 IPI annotations require a With/From entry

gorule-0000020 Automatic repair of annotations to merged or obsoleted terms

gorule-0000027 Each identifier in GAF is valid

gorule-0000063 Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)

MESSAGES

gorule-0000001

GAF lines are parsed according to GAF 2.2 specifications

• total: 1

messages

• WARNING - Invalid subject type:defaulting to 'gene_product'--`PomBase SPNCRNA.530 sno530 enables GO:0030563 PMID:37403782 EXP F small nucleolar RNA sno530 sncRNA taxon:4896 20230710 PomBase has_input(PomBase:SPSNRNA.06),part_of(GO:0016180) `

gorule-0000008

No annotations should be made to uninformative high level terms

• total: 4

messages

• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`PomBase SPAC27F1.02c cdc8 involved_in GO:1904530 PMID:17452625 IDA P tropomyosin fus4 protein taxon:4896 20170811 PomBase `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`PomBase SPAC27F1.02c cdc8 enables GO:0098772 PMID:12796476 IDA F tropomyosin fus4 protein taxon:4896 20200317 PomBase has_input(PomBase:SPAC1F5.04c) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`PomBase SPAC637.12c mst1 enables GO:0034212 PMID:19915592 EXP F histone acetyltransferase, KAT5 family Mst1 kat5 protein taxon:4896 20240402 PomBase has_input(PomBase:SPBC11B10.10c) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`PomBase SPBC1778.06c fim1 involved_in GO:1904530 PMID:20705466 IDA P fimbrin protein taxon:4896 20170630 PomBase has_input(PomBase:SPAC27F1.02c) `

gorule-0000013

Taxon-appropriate annotation check

• total: 83

messages

• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC1039.10 mmf2 involved_in GO:1901705 GO_REF:0000024 ISO SGD:S000001313 P mitochondrial matrix protein, YjgF family protein Mmf2, reactive intermediate imine deaminase A homolog SPAC922.01|hpm1 protein taxon:4896 20100608 PomBase `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC16C9.02c mta1 involved_in GO:0019509 GO_REF:0000024 ISO SGD:S000004007 P S-methyl-5-thioadenosine phosphorylase Mta1 protein taxon:4896 20050415 PomBase `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC16E8.04c aro7 involved_in GO:0009094 GO_REF:0000024 ISS UniProtKB:P32178 P chorismate mutase Aro7 protein taxon:4896 20050225 PomBase `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC1783.01 SPAC1783.01 involved_in GO:0009086 GO_REF:0000024 ISS UniProtKB:Q9UBK8 P methionine synthase reductase protein taxon:4896 20100625 PomBase `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC17G8.06c ilv3 involved_in GO:1901705 GO_REF:0000024 ISS UniProtKB:P39522 P dihydroxy-acid dehydratase Ilv3 protein taxon:4896 20040624 PomBase `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC1805.10 ccz1 part_of GO:0035658 GO_REF:0000024 ISO SGD:S000000335 C Mon1-Ccz1 GEF complex subunit Ccz1 protein taxon:4896 20240810 PomBase `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC19A8.15 trp2 involved_in GO:0000162 GO_REF:0000024 ISO SGD:S000002994 P tryptophan synthase protein taxon:4896 20050609 PomBase `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC19A8.15 trp2 enables GO:0004834 GO_REF:0000024 ISO SGD:S000002994 F tryptophan synthase protein taxon:4896 20050609 PomBase `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC20H4.05c mde1 involved_in GO:0019509 GO_REF:0000024 ISO SGD:S000003785 P 5'-methylthioribulose-1-phosphate dehydratase, adducin Mde1 protein taxon:4896 20091004 PomBase `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC27D7.08c mtl16 enables GO:0052907 GO_REF:0000024 ISO UniProtKB:P75782 F 23S rRNA/U6 snRNA (adenine-N(6))-methyltransferase Mtl16 protein taxon:4896 20161012 PomBase `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC3F10.09 his6 involved_in GO:0000105 GO_REF:0000024 ISO SGD:S000001282 P 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino]imidazole-4-carboxamide isomerase His6 protein taxon:4896 20050104 PomBase `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC644.08 utr4 involved_in GO:0019509 GO_REF:0000024 ISO SGD:S000000764 P methionine salvage haloacid dehalogenase-like hydrolase Utr4 protein taxon:4896 20081207 PomBase `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC9.06c mta3 involved_in GO:0019509 GO_REF:0000024 ISO SGD:S000003785 P 5'-methylthioribulose-1-phosphate dehydratase, adducin Mta3 protein taxon:4896 20091004 PomBase `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC9E9.06c SPAC9E9.06c involved_in GO:0009088 GO_REF:0000024 ISS UniProtKB:P16120 P threonine synthase protein taxon:4896 20030610 PomBase `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC12C2.03c SPBC12C2.03c involved_in GO:0009086 GO_REF:0000024 ISS UniProtKB:Q9UBK8 P methionine synthase reductase protein taxon:4896 20100625 PomBase `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC14C8.04 ilv6 involved_in GO:1901705 GO_REF:0000024 ISO SGD:S000000515 P acetolactate synthase regulatory subunit Ilv6 protein taxon:4896 20040712 PomBase `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC14C8.04 ilv6 involved_in GO:0009098 GO_REF:0000024 ISO SGD:S000000515 P acetolactate synthase regulatory subunit Ilv6 protein taxon:4896 20040712 PomBase `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC14C8.04 ilv6 involved_in GO:0009099 GO_REF:0000024 ISO SGD:S000000515 P acetolactate synthase regulatory subunit Ilv6 protein taxon:4896 20040712 PomBase `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC216.04c mxr2 involved_in GO:1990355 PMID:24118096 TAS P peptide-methionine (R)-S-oxide reductase MsrB MsrB protein taxon:4896 20250112 PomBase `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC21H7.07c his5 involved_in GO:0000105 PMID:8590485 TAS P imidazoleglycerol-phosphate dehydratase His5 protein taxon:4896 20050416 PomBase `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC23E6.10c mri1 involved_in GO:0019509 GO_REF:0000024 ISO SGD:S000006322 P methylthioribose-1-phosphate isomerase Mri1 protein taxon:4896 20050415 PomBase `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC2G2.04c mmf1 involved_in GO:1901705 GO_REF:0000024 ISO SGD:S000001313 P mitochondrial matrix protein, YjgF family protein Mmf1, reactive intermediate imine deaminase A homolog Mmf1 pmf1 protein taxon:4896 20170716 PomBase `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC418.01c his4 involved_in GO:0000105 GO_REF:0000024 ISO SGD:S000000452 P imidazoleglycerol-phosphate synthase His4 SPBC887.20c protein taxon:4896 20050126 PomBase `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC4C3.03 thr1 involved_in GO:0009088 GO_REF:0000024 ISS UniProtKB:P17423 P homoserine kinase Thr1 protein taxon:4896 20030612 PomBase `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC56F2.12 ilv5 involved_in GO:1901705 GO_REF:0000024 ISS UniProtKB:P06168 P acetohydroxyacid reductoisomerase protein taxon:4896 20040524 PomBase `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC56F2.12 ilv5 involved_in GO:0009099 GO_REF:0000024 ISS UniProtKB:P06168 P acetohydroxyacid reductoisomerase protein taxon:4896 20040524 PomBase `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC887.01 adi1 involved_in GO:0019509 GO_REF:0000050 ISM InterPro:IPR004313 P acireductone dioxygenase family Adi1 protein taxon:4896 20081208 PomBase `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBP35G2.07 ilv1 involved_in GO:0009098 PMID:8299177 IC GO:0003984 P acetolactate synthase catalytic subunit protein taxon:4896 20190114 PomBase `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPCC1223.03c gut2 part_of GO:0009331 GO_REF:0000024 ISO SGD:S000001417 C glycerol-3-phosphate dehydrogenase Gut2 protein taxon:4896 20040618 PomBase `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPCC1672.01 SPCC1672.01 involved_in GO:0000105 GO_REF:0000024 ISO SGD:S000001921 P histidinol-phosphatase protein taxon:4896 20050416 PomBase `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPCC1827.06c hom2 involved_in GO:0009086 GO_REF:0000024 ISS UniProtKB:P13663 P aspartate semialdehyde dehydrogenase Hom2 protein taxon:4896 20030609 PomBase `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPCC1827.06c hom2 involved_in GO:0009088 GO_REF:0000024 ISS UniProtKB:P13663 P aspartate semialdehyde dehydrogenase Hom2 protein taxon:4896 20030609 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC17C9.02c lys7 involved_in GO:0009085 PMID:15546125 IDA P alpha-aminoadipate reductase phosphopantetheinyl transferase Lys7 protein taxon:4896 20041206 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC17C9.02c lys7 involved_in GO:0009085 PMID:12127488 IDA P alpha-aminoadipate reductase phosphopantetheinyl transferase Lys7 protein taxon:4896 20140806 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC17C9.02c lys7 involved_in GO:0019878 PMID:3142867 IMP P alpha-aminoadipate reductase phosphopantetheinyl transferase Lys7 protein taxon:4896 20130924 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC17G8.06c ilv3 involved_in GO:0009097 PMID:35325114 IMP P dihydroxy-acid dehydratase Ilv3 protein taxon:4896 20220630 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC17G8.06c ilv3 involved_in GO:0009098 PMID:35325114 IMP P dihydroxy-acid dehydratase Ilv3 protein taxon:4896 20220630 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC17G8.06c ilv3 involved_in GO:0009099 PMID:35325114 IMP P dihydroxy-acid dehydratase Ilv3 protein taxon:4896 20220630 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC227.18 lys3 involved_in GO:0019878 PMID:3142867 IMP P saccharopine dehydrogenase Lys3 SPAC2F7.01 protein taxon:4896 20050509 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC227.18 lys3 involved_in GO:0019878 PMID:17622533 IMP P saccharopine dehydrogenase Lys3 SPAC2F7.01 protein taxon:4896 20130920 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC25G10.05c his1 involved_in GO:0000105 PMID:7732725 IGI SGD:S000000857 P ATP phosphoribosyltransferase protein taxon:4896 20040929 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC29E6.05c mxr1 involved_in GO:1990355 PMID:24118096 IMP P peptide-methionine (S)-S-oxide reductase MsrA MsrA|SPAC30.09c protein taxon:4896 20140402 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC31G5.04 lys12 involved_in GO:0009085 PMID:20537132 IMP P homoisocitrate dehydrogenase Lys12 protein taxon:4896 20211001 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC31G5.04 lys12 involved_in GO:0019878 PMID:17622533 IMP P homoisocitrate dehydrogenase Lys12 protein taxon:4896 20130920 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC343.16 lys2 involved_in GO:0009085 PMID:16491385 IMP P homoaconitate hydratase Lys2 protein taxon:4896 20120424 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC343.16 lys2 involved_in GO:0019878 PMID:3142867 IMP P homoaconitate hydratase Lys2 protein taxon:4896 20130924 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC343.16 lys2 involved_in GO:0019878 PMID:17622533 IMP P homoaconitate hydratase Lys2 protein taxon:4896 20130920 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC7D4.07c trx1 involved_in GO:1990355 PMID:24118096 IMP P cytosolic thioredoxin Trx1 protein taxon:4896 20140402 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC9.09 met26 involved_in GO:0019280 PMID:16436428 IMP P homocysteine methyltransferase Met26 protein taxon:4896 20140619 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC9E9.03 leu2 involved_in GO:0009098 PMID:17248775 EXP P 3-isopropylmalate dehydratase Leu2 protein taxon:4896 20161220 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAP7G5.04c lys1 involved_in GO:0009085 PMID:15546125 IDA P aminoadipate-semialdehyde dehydrogenase protein taxon:4896 20041206 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAP7G5.04c lys1 involved_in GO:0009085 PMID:16491385 IMP P aminoadipate-semialdehyde dehydrogenase protein taxon:4896 20120424 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAP7G5.04c lys1 involved_in GO:0009085 PMID:8350245 IMP P aminoadipate-semialdehyde dehydrogenase protein taxon:4896 20140911 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAP7G5.04c lys1 involved_in GO:0019878 PMID:8590464 IMP P aminoadipate-semialdehyde dehydrogenase protein taxon:4896 20121004 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAP7G5.04c lys1 involved_in GO:0019878 PMID:3142867 IMP P aminoadipate-semialdehyde dehydrogenase protein taxon:4896 20130924 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC1105.02c lys4 involved_in GO:0009085 PMID:19776021 IDA P homocitrate synthase protein taxon:4896 20161031 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC1105.02c lys4 involved_in GO:0019878 PMID:16299000 IMP P homocitrate synthase protein taxon:4896 20050429 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC1105.02c lys4 involved_in GO:0019878 PMID:20089861 EXP P homocitrate synthase protein taxon:4896 20230705 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC1105.02c lys4 involved_in GO:0019878 PMID:3142867 IMP P homocitrate synthase protein taxon:4896 20130924 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC1105.02c lys4 involved_in GO:0019878 PMID:17622533 IMP P homocitrate synthase protein taxon:4896 20130920 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC11B10.02c his3 involved_in GO:0000105 PMID:16444015 IMP P histidinol-phosphate transaminase His3 protein taxon:4896 20130828 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC1539.09c trp1 involved_in GO:0000162 PMID:24186364 IMP P phosphoribosylanthranilate isomerase/indole-3-glycerol-phosphate synthase/unknown aminotransferase, multifunctional enzyme Trp1 protein taxon:4896 20140417 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC1677.03c tda1 involved_in GO:1901705 PMID:4698209 IDA P threonine ammonia-lyase Tda1 protein taxon:4896 20130816 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC16G5.08 trp4 involved_in GO:0000162 PMID:17248775 EXP P phosphoribosylanthranilate transferase Trp4 protein taxon:4896 20161220 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC1711.13 his2 involved_in GO:0000105 PMID:15704224 IMP P histidinol dehydrogenase His2 protein taxon:4896 20061109 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC1711.13 his2 involved_in GO:0000105 PMID:17248775 EXP P histidinol dehydrogenase His2 protein taxon:4896 20161220 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC1A4.02c leu1 involved_in GO:0009098 PMID:3063400 IGI SGD:S000000523 P 3-isopropylmalate dehydrogenase Leu1 SPBC1E8.07c protein taxon:4896 20050809 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC29A3.02c his7 involved_in GO:0000105 PMID:8299169 IGI UniProtKB:P06989 P phosphoribosyl-AMP cyclohydrolase/phosphoribosyl- ATP pyrophosphohydrolase His7 protein taxon:4896 20130412 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC30D10.16 pha2 involved_in GO:0009094 PMID:17622533 IMP P phrenate dehydratase protein taxon:4896 20130920 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC3B8.03 lys9 involved_in GO:0009085 PMID:20537132 IMP P saccharopine dehydrogenase protein taxon:4896 20211001 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC3E7.16c leu3 involved_in GO:0009098 PMID:20657649 IGI UniProtKB:E2D2C5 P 2-isopropylmalate synthase Leu3 SPBC4F6.03c protein taxon:4896 20040823 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC3E7.16c leu3 involved_in GO:0009098 PMID:20657649 IMP P 2-isopropylmalate synthase Leu3 SPBC4F6.03c protein taxon:4896 20040823 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC428.02c eca39 involved_in GO:1901705 PMID:9483807 IGI UniProtKB:P38891 P branched chain amino acid aminotransferase Eca39 SPBC582.12c protein taxon:4896 20040507 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC428.02c eca39 involved_in GO:0009098 PMID:9483807 IGI UniProtKB:P38891 P branched chain amino acid aminotransferase Eca39 SPBC582.12c protein taxon:4896 20040507 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC428.02c eca39 involved_in GO:0009099 PMID:9483807 IGI UniProtKB:P38891 P branched chain amino acid aminotransferase Eca39 SPBC582.12c protein taxon:4896 20040507 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC56F2.11 met6 involved_in GO:0071266 PMID:16216079 IDA P homoserine O-acetyltransferase Met6 protein taxon:4896 20191030 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC56F2.11 met6 involved_in GO:0071265 PMID:17622533 IMP P homoserine O-acetyltransferase Met6 protein taxon:4896 20070716 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC56F2.11 met6 involved_in GO:0009086 PMID:9829945 IMP P homoserine O-acetyltransferase Met6 protein taxon:4896 20130920 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBP35G2.07 ilv1 involved_in GO:0009097 PMID:4698210 EXP P acetolactate synthase catalytic subunit protein taxon:4896 20130925 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBP35G2.07 ilv1 involved_in GO:1901705 PMID:8299177 IGI UniProtKB:P07342 P acetolactate synthase catalytic subunit protein taxon:4896 20040712 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBP35G2.07 ilv1 involved_in GO:0009099 PMID:4821071 IDA P acetolactate synthase catalytic subunit protein taxon:4896 20140422 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBP35G2.07 ilv1 involved_in GO:0009099 PMID:4698210 EXP P acetolactate synthase catalytic subunit protein taxon:4896 20130925 PomBase `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPCC1442.09 trp3 involved_in GO:0000162 PMID:17248775 EXP P anthranilate synthase component I Trp3 protein taxon:4896 20161220 PomBase `

gorule-0000016

With/From: IC annotations require a With/From GO ID

• total: 1

messages

• WARNING - Violates GO Rule:GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column--`PomBase SPATRNATYR.01 SPATRNATYR.01 enables GO:0033410 GO_REF:0000111 IC GO:0033410 F tRNA Tyrosine tRNA taxon:4896 20150206 PomBase `

gorule-0000018

IPI annotations require a With/From entry

• total: 1

messages

• WARNING - Violates GO Rule:GORULE:0000018: IPI annotations require a With/From entry--`PomBase SPAC1565.08 cdc48 enables GO:0031625 PMID:22086920 IPI F AAA family ATPase involved in ubiquitin-mediated protein degradation Cdc48 SPAC6F12.01|dsc6 protein taxon:4896 20120712 PomBase `

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 5

messages

• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`PomBase SPMTR.01 mat2-Pc is_active_in GO:0005634 GO_REF:0000036 IC GO:0003677,GO:0036003 C silenced P-specific transcription factor Pc mat-Pc|mat2Pc|matPc protein taxon:4896 20150121 PomBase `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC222.12c atp2 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C F1-FO ATP synthase beta subunit (central stalk) Atp2 protein taxon:4896 20240724 PomBase `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC13E7.04 atp16 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C F1-FO ATP synthase delta subunit (central stalk) Atp16 protein taxon:4896 20240724 PomBase `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC1734.13 atp3 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C F1-FO ATP synthase gamma subunit protein taxon:4896 20240724 PomBase `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC31F10.15c atp15 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C F1-FO ATP synthase epsilon subunit (central stalk) Atp15 protein taxon:4896 20240724 PomBase `

gorule-0000027

Each identifier in GAF is valid

• total: 1

messages

• WARNING - Invalid identifier:GORULE:0000027: PBQ not found in list of database names in dbxrefs--`PomBase SPBC3B8.10c nem1 is_active_in GO:0005634 PMID:30116786 IDA C serine/threonine protein phosphatase (Nem1-Spo7 complex) catalytic subunit Nem1 protein taxon:4896 20180828 PomBase existence_overlaps(PBQ:0000003) `

gorule-0000063

Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)

• total: 1

messages

• WARNING - Violates GO Rule:GORULE:0000063: Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)--`PomBase SPBC115.02c afg1 involved_in GO:0141164 GO_REF:0000024 ISO P AFG1 family mitochondrial ATPase/chaperone Afg1 protein taxon:4896 20241103 PomBase `