GORULE violations assigned by pombase
Contents
gorule-0000008
No annotations should be made to uninformative high level terms
gorule-0000013
Taxon-appropriate annotation check
gorule-0000016
With/From: IC annotations require a With/From GO ID
gorule-0000020
Automatic repair of annotations to merged or obsoleted terms
MESSAGES
gorule-0000008
No annotations should be made to uninformative high level terms
messages
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`PomBase SPAC26F1.04c etr1 enables GO:0016631 GO_REF:0000024 ISO SGD:S000000230 F enoyl-[acyl-carrier protein] reductase protein taxon:4896 20040618 PomBase
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`PomBase SPAC27F1.02c cdc8 involved_in GO:1904530 PMID:17452625 IDA P tropomyosin fus4 protein taxon:4896 20170811 PomBase
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`PomBase SPAC27F1.02c cdc8 enables GO:0098772 PMID:12796476 IDA F tropomyosin fus4 protein taxon:4896 20200317 PomBase has_input(PomBase:SPAC1F5.04c)
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`PomBase SPBC1778.06c fim1 involved_in GO:1904530 PMID:20705466 IDA P fimbrin protein taxon:4896 20170630 PomBase has_input(PomBase:SPAC27F1.02c)
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`PomBase SPBC646.07c tsc13 enables GO:0016631 GO_REF:0000051 NAS F enoyl-[acyl-carrier-protein] reductase protein taxon:4896 20051013 PomBase
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`JaponicusDB SJAG_02007 etr1 enables GO:0016631 GO_REF:0000107 IEA PomBase:SPAC26F1.04c F enoyl-[acyl-carrier protein] reductase protein taxon:4897 20240418 PomBase
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`JaponicusDB SJAG_02717 tsc13 enables GO:0016631 GO_REF:0000107 IEA PomBase:SPBC646.07c F enoyl-[acyl-carrier-protein] reductase protein taxon:4897 20240418 PomBase
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`JaponicusDB SJAG_03088 fim1 involved_in GO:1904530 GO_REF:0000107 IEA PomBase:SPBC1778.06c P fimbrin protein taxon:4897 20240418 PomBase
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`JaponicusDB SJAG_04887 cdc8 involved_in GO:1904530 GO_REF:0000107 IEA PomBase:SPAC27F1.02c P tropomyosin protein taxon:4897 20240418 PomBase
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`JaponicusDB SJAG_04887 cdc8 enables GO:0098772 GO_REF:0000107 IEA PomBase:SPAC27F1.02c F tropomyosin protein taxon:4897 20240418 PomBase
`
gorule-0000013
Taxon-appropriate annotation check
messages
- ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC23D3.04c gpd2 enables GO:0047952 GO_REF:0000024 ISO SGD:S000002180 F glycerol-3-phosphate dehydrogenase Gpd2 protein taxon:4896 20100731 PomBase
`
- ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`JaponicusDB SJAG_00409 gpd1 enables GO:0047952 GO_REF:0000107 IEA PomBase:SPBC215.05 F glycerol-3-phosphate dehydrogenase Gpd1 protein taxon:4897 20240418 PomBase
`
- ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`JaponicusDB SJAG_01012 gpd2 enables GO:0047952 GO_REF:0000107 IEA PomBase:SPAC23D3.04c F glycerol-3-phosphate dehydrogenase Gpd2 protein taxon:4897 20240418 PomBase
`
- WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC215.05 gpd1 enables GO:0047952 PMID:8825100 IMP F glycerol-3-phosphate dehydrogenase Gpd1 protein taxon:4896 20050715 PomBase
`
gorule-0000016
With/From: IC annotations require a With/From GO ID
messages
- WARNING - Violates GO Rule:GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column--`PomBase SPATRNATYR.01 SPATRNATYR.01 enables GO:0033410 GO_REF:0000111 IC GO:0033410 F tRNA Tyrosine tRNA taxon:4896 20150206 PomBase
`
gorule-0000020
Automatic repair of annotations to merged or obsoleted terms
messages
- ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`PomBase SPMTR.01 mat2-Pc is_active_in GO:0005634 GO_REF:0000036 IC GO:0003677,GO:0036003 C silenced P-specific trancription factor Pc mat-Pc|mat2Pc|matPc protein taxon:4896 20150121 PomBase
`
- WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC23A1.14c SPAC23A1.14c enables GO:0004121 GO_REF:0000024 ISO SGD:S000001154 F cystathionine beta-lyase protein taxon:4896 20230612 PomBase
`
- WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPCC11E10.01 cbl1 involved_in GO:0019279 GO_REF:0000111 IC GO:0004121 P cystathionine beta-lyase Cbl1 SPCC61.06 protein taxon:4896 20030724 PomBase
`
- WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPCC11E10.01 cbl1 enables GO:0004121 GO_REF:0000024 ISS UniProtKB:Q96VU8 F cystathionine beta-lyase Cbl1 SPCC61.06 protein taxon:4896 20030724 PomBase
`
- WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC140.04 ctr1 involved_in GO:0034470 PMID:24210919 IMP P MTREC associated protein Ctr1 protein taxon:4896 20231119 PomBase has_input(PomBase:SPNCRNA.214)
`
- WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPCC965.11c agp3 involved_in GO:0098713 PMID:22992726 IMP P plasma membrane leucine transmembrane transporter Agp3 protein taxon:4896 20131111 PomBase
`