GORULE violations assigned by TIGR

Contents

gorule-0000001 GAF lines are parsed according to GAF 2.2 specifications

gorule-0000008 No annotations should be made to uninformative high level terms

gorule-0000016 With/From: IC annotations require a With/From GO ID

gorule-0000020 Automatic repair of annotations to merged or obsoleted terms

gorule-0000027 Each identifier in GAF is valid

gorule-0000061 Allowed gene product to term relations (gp2term)

MESSAGES

gorule-0000001

GAF lines are parsed according to GAF 2.2 specifications

• total: 1

messages

• WARNING - Invalid subject type:has been repaired--`AGI_LocusCode AT2G23040 AT2G23040 enables GO:0003674 TAIR:Communication:1345790 ND F AT2G23040 AT2G23040|F21P24.10|F21P24_10 lnc_RNA taxon:3702 20031004 TIGR TAIR:locus:2045304`

gorule-0000008

No annotations should be made to uninformative high level terms

• total: 9

messages

• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`AGI_LocusCode AT4G29010 AIM1 acts_upstream_of_or_within GO:0007275 TAIR:Publication:1097|PMID:10521521 IMP P AT4G29010 AT4G29010|AIM1|ABNORMAL INFLORESCENCE MERISTEM|F19B15.40|F19B15_40 protein taxon:3702 20030512 TIGR TAIR:locus:2119891 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`AGI_LocusCode AT5G17520 RCP1 acts_upstream_of_or_within GO:0007275 TAIR:Publication:1060|PMID:10536027 IMP P AT5G17520 AT5G17520|RCP1|MEX1|ROOT CAP 1|MALTOSE EXCESS 1|K3M16.90|K3M16_90 protein taxon:3702 20030417 TIGR TAIR:locus:2157492 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`AGI_LocusCode AT2G27250 CLV3 acts_upstream_of_or_within GO:0016043 TAIR:Publication:202|PMID:10915624 IMP P AT2G27250 AT2G27250|CLV3|AtCLV3|CLAVATA3|f12k2.17|f12k2_17 protein taxon:3702 20030417 TIGR TAIR:locus:2005502 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`AGI_LocusCode AT3G20740 FIE acts_upstream_of_or_within GO:0022414 TAIR:Publication:501680858|PMID:11148284 IMP P AT3G20740 AT3G20740|FIE|FIS3|FIE1|FERTILIZATION-INDEPENDENT ENDOSPERM|FERTILIZATION-INDEPENDENT ENDOSPERM 1|MOE17.5 protein taxon:3702 20240326 TIGR TAIR:locus:2091876 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`AGI_LocusCode AT1G43850 SEU acts_upstream_of_or_within GO:0007275 TAIR:Publication:1546142|PMID:11782418 IMP P AT1G43850 AT1G43850|SEU|seuss|F28H19.10|F28H19_10 protein taxon:3702 20031004 TIGR TAIR:locus:2029137 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`AGI_LocusCode AT4G27760 FEY acts_upstream_of_or_within GO:0007275 TAIR:Publication:4636|PMID:7849756 IMP P AT4G27760 AT4G27760|FEY|FEY3|FOREVER YOUNG|T27E11.1 protein taxon:3702 20030512 TIGR TAIR:locus:2137772 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`AGI_LocusCode AT3G27170 CLC-B located_in GO:0005622 TAIR:Publication:3512|PMID:8969232 TAS C AT3G27170 AT3G27170|CLC-B|ATCLC-B|chloride channel B|MYF5.4 protein taxon:3702 20030417 TIGR TAIR:locus:2095123 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`AGI_LocusCode AT5G26240 CLC-D located_in GO:0005622 TAIR:Publication:3512|PMID:8969232 IC GO:0005247 C AT5G26240 AT5G26240|CLC-D|ATCLC-D|CLCd|AtCLCd|chloride channel D|T19G15.90|T19G15_90|chloride channel d protein taxon:3702 20030512 TIGR TAIR:locus:2179724 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`AGI_LocusCode AT5G49890 CLC-C located_in GO:0005622 TAIR:Publication:3512|PMID:8969232 TAS C AT5G49890 AT5G49890|CLC-C|ATCLC-C|chloride channel C|K9P8.3|K9P8_3|chloride channel c protein taxon:3702 20030417 TIGR TAIR:locus:2158809 `

gorule-0000016

With/From: IC annotations require a With/From GO ID

• total: 1

messages

• WARNING - Violates GO Rule:GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column--`AGI_LocusCode AT1G08150 ATCHX5 acts_upstream_of_or_within GO:0006812 TAIR:Publication:501680620|PMID:11500563 IC GO:0006812 P AT1G08150 AT1G08150|ATCHX5|CHX5|CATION/H+ EXCHANGER 5|T6D22.24 protein taxon:3702 20030512 TIGR TAIR:locus:2205165 `

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 31

messages

• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`AGI_LocusCode AT1G05580 CHX23 acts_upstream_of_or_within GO:0006812 TAIR:Publication:501680620|PMID:11500563 IC GO:0005451 P AT1G05580 AT1G05580|ATCHX23|CHX23|cation/H+ exchanger 23|F3F20.2|F3F20_2 protein taxon:3702 20030417 TIGR TAIR:locus:2031968 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`AGI_LocusCode AT1G06970 CHX14 acts_upstream_of_or_within GO:0006812 TAIR:Publication:501680620|PMID:11500563 IC GO:0005451 P AT1G06970 AT1G06970|CHX14|ATCHX14|cation/hydrogen exchanger 14|F10K1.31|F10K1_31 protein taxon:3702 20030417 TIGR TAIR:locus:2007392 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`AGI_LocusCode AT1G08135 CHX6B acts_upstream_of_or_within GO:0006812 TAIR:Publication:501680620|PMID:11500563 IC GO:0005451 P AT1G08135 AT1G08135|ATCHX6B|CHX6B|cation/H+ exchanger 6B protein taxon:3702 20030512 TIGR TAIR:locus:1005716662 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`AGI_LocusCode AT1G16380 ATCHX1 acts_upstream_of_or_within GO:0006812 TAIR:Publication:501680620|PMID:11500563 IC GO:0005451 P AT1G16380 AT1G16380|ATCHX1|CHX1|CAX1|CATION EXCHANGER 1|F3O9.18|F3O9_18 protein taxon:3702 20030417 TIGR TAIR:locus:2032805 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`AGI_LocusCode AT1G64170 CHX16 acts_upstream_of_or_within GO:0006812 TAIR:Publication:501680620|PMID:11500563 IC GO:0005451 P AT1G64170 AT1G64170|ATCHX16|CHX16|cation/H+ exchanger 16|F22C12.7|F22C12_7 protein taxon:3702 20030417 TIGR TAIR:locus:2024578 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`AGI_LocusCode AT1G79400 CHX2 acts_upstream_of_or_within GO:0006812 TAIR:Publication:501680620|PMID:11500563 IC GO:0005451 P AT1G79400 AT1G79400|ATCHX2|CHX2|cation/H+ exchanger 2|T8K14.18|T8K14_18 protein taxon:3702 20030417 TIGR TAIR:locus:2206360 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`AGI_LocusCode AT2G13620 CHX15 acts_upstream_of_or_within GO:0006812 TAIR:Publication:501680620|PMID:11500563 IC GO:0005451 P AT2G13620 AT2G13620|ATCHX15|CHX15|cation/hydrogen exchanger 15|CATION/H+ EXCHANGER 15|T10F5.16|T10F5_16 protein taxon:3702 20030417 TIGR TAIR:locus:2054152 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`AGI_LocusCode AT2G28170 ATCHX7 acts_upstream_of_or_within GO:0006812 TAIR:Publication:501680620|PMID:11500563 IC GO:0005451 P AT2G28170 AT2G28170|ATCHX7|CHX7|CATION/H+ EXCHANGER 7|F24D13.4|F24D13_4 protein taxon:3702 20030417 TIGR TAIR:locus:2046188 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`AGI_LocusCode AT2G28180 ATCHX8 acts_upstream_of_or_within GO:0006812 TAIR:Publication:501680620|PMID:11500563 IC GO:0005451 P AT2G28180 AT2G28180|ATCHX8|CHX8|CHX08|CATION/H+ EXCHANGER 8|F24D13.3|F24D13_3 protein taxon:3702 20030417 TIGR TAIR:locus:2046178 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`AGI_LocusCode AT2G30240 ATCHX13 acts_upstream_of_or_within GO:0006812 TAIR:Publication:501680620|PMID:11500563 IC GO:0005451 P AT2G30240 AT2G30240|ATCHX13|CHX13|CATION/H+ EXCHANGER 13|T9D9.5|T9D9_5 protein taxon:3702 20030512 TIGR TAIR:locus:2060827 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`AGI_LocusCode AT2G37910 AT2G37910 acts_upstream_of_or_within GO:0006812 TAIR:Publication:501680620|PMID:11500563 IC GO:0005451 P AT2G37910 AT2G37910|T8P21.18|T8P21_18 protein taxon:3702 20030417 TIGR TAIR:locus:2065558 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`AGI_LocusCode AT3G17630 CHX19 acts_upstream_of_or_within GO:0006812 TAIR:Publication:501680620|PMID:11500563 IC GO:0005451 P AT3G17630 AT3G17630|ATCHX19|CHX19|cation/H+ exchanger 19|MKP6.1 protein taxon:3702 20030417 TIGR TAIR:locus:2090462 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`AGI_LocusCode AT3G44900 CHX4 acts_upstream_of_or_within GO:0006812 TAIR:Publication:501680620|PMID:11500563 IC GO:0005451 P AT3G44900 AT3G44900|ATCHX4|CHX4|cation/H+ exchanger 4|F28D10.90 protein taxon:3702 20030417 TIGR TAIR:locus:2082142 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`AGI_LocusCode AT3G44910 CHX12 acts_upstream_of_or_within GO:0006812 TAIR:Publication:501680620|PMID:11500563 IC GO:0005451 P AT3G44910 AT3G44910|ATCHX12|CHX12|cation/H+ exchanger 12|F28D10.100 protein taxon:3702 20030417 TIGR TAIR:locus:2082137 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`AGI_LocusCode AT3G44920 CHX11 acts_upstream_of_or_within GO:0006812 TAIR:Publication:501680620|PMID:11500563 IC GO:0005451 P AT3G44920 AT3G44920|ATCHX11|CHX11|cation/H+ exchanger 11|F28D10.110 protein taxon:3702 20030417 TIGR TAIR:locus:2082152 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`AGI_LocusCode AT3G44930 CHX10 acts_upstream_of_or_within GO:0006812 TAIR:Publication:501680620|PMID:11500563 IC GO:0005451 P AT3G44930 AT3G44930|ATCHX10|CHX10|cation/H+ exchanger 10|F28D10.120 protein taxon:3702 20030417 TIGR TAIR:locus:2082102 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`AGI_LocusCode AT3G52080 chx28 acts_upstream_of_or_within GO:0006812 TAIR:Publication:501680620|PMID:11500563 IC GO:0005451 P AT3G52080 AT3G52080|chx28|cation/hydrogen exchanger 28|F4F15.190 protein taxon:3702 20030417 TIGR TAIR:locus:2083830 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`AGI_LocusCode AT3G53720 CHX20 acts_upstream_of_or_within GO:0006812 TAIR:Publication:501680620|PMID:11500563 IC GO:0005451 P AT3G53720 AT3G53720|ATCHX20|CHX20|cation/H+ exchanger 20|F5K20.20 protein taxon:3702 20030417 TIGR TAIR:locus:2084370 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`AGI_LocusCode AT4G23700 CHX17 acts_upstream_of_or_within GO:0006812 TAIR:Publication:501680620|PMID:11500563 IC GO:0005451 P AT4G23700 AT4G23700|ATCHX17|CHX17|cation/H+ exchanger 17|F9D16.170|F9D16_170 protein taxon:3702 20030417 TIGR TAIR:locus:2128484 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`AGI_LocusCode AT5G01680 CHX26 acts_upstream_of_or_within GO:0006812 TAIR:Publication:501680620|PMID:11500563 IC GO:0005451 P AT5G01680 AT5G01680|ATCHX26|CHX26|ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 26|cation/H+ exchanger 26|F7A7.200|F7A7_200 protein taxon:3702 20030417 TIGR TAIR:locus:2149740 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`AGI_LocusCode AT5G01690 CHX27 acts_upstream_of_or_within GO:0006812 TAIR:Publication:501680620|PMID:11500563 IC GO:0005451 P AT5G01690 AT5G01690|ATCHX27|CHX27|ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 27|cation/H+ exchanger 27|F7A7.210|F7A7_210 protein taxon:3702 20030417 TIGR TAIR:locus:2149760 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`AGI_LocusCode AT5G22900 CHX3 acts_upstream_of_or_within GO:0006812 TAIR:Publication:501680620|PMID:11500563 IC GO:0005451 P AT5G22900 AT5G22900|ATCHX3|CHX3|ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3|cation/H+ exchanger 3|MRN17.13|MRN17_13 protein taxon:3702 20030417 TIGR TAIR:locus:2172631 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`AGI_LocusCode AT5G22910 CHX9 acts_upstream_of_or_within GO:0006812 TAIR:Publication:501680620|PMID:11500563 IC GO:0005451 P AT5G22910 AT5G22910|ATCHX9|CHX9|ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 9|cation/H+ exchanger 9|MRN17.14|MRN17_14 protein taxon:3702 20030417 TIGR TAIR:locus:2172646 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`AGI_LocusCode AT5G37060 CHX24 acts_upstream_of_or_within GO:0006812 TAIR:Publication:501680620|PMID:11500563 IC GO:0005451 P AT5G37060 AT5G37060|ATCHX24|CHX24|ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24|cation/H+ exchanger 24|MJG14.5|MJG14_5 protein taxon:3702 20030512 TIGR TAIR:locus:2166168 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`AGI_LocusCode AT5G41610 CHX18 acts_upstream_of_or_within GO:0006812 TAIR:Publication:501680620|PMID:11500563 IC GO:0005451 P AT5G41610 AT5G41610|ATCHX18|CHX18|ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18|cation/H+ exchanger 18|MBK23.12|MBK23_12 protein taxon:3702 20030417 TIGR TAIR:locus:2160457 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`AGI_LocusCode AT5G58460 CHX25 acts_upstream_of_or_within GO:0006812 TAIR:Publication:501680620|PMID:11500563 IC GO:0005451 P AT5G58460 AT5G58460|ATCHX25|CHX25|ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 25|cation/H+ exchanger 25|MQJ2.3|MQJ2_3 protein taxon:3702 20030417 TIGR TAIR:locus:2171238 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`AGI_LocusCode AT4G34640 SQS1 enables GO:0004310 TAIR:Publication:4472|PMID:7892265 IDA F AT4G34640 AT4G34640|SQS1|ERG9|squalene synthase 1|T4L20.220|T4L20_220|SQUALENE SYNTHASE protein taxon:3702 20030417 TIGR TAIR:locus:2139514 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`AGI_LocusCode AT4G34650 SQS2 enables GO:0004310 TAIR:Publication:2989|PMID:9363754 IDA F AT4G34650 AT4G34650|SQS2|squalene synthase 2|T4L20.230|T4L20_230 protein taxon:3702 20030417 TIGR TAIR:locus:2139534 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`AGI_LocusCode AT1G30040 GA2OX2 enables GO:0052634 TAIR:Publication:1624|PMID:10200325 IDA F AT1G30040 AT1G30040|ATGA2OX2|GA2OX2|gibberellin 2-oxidase|GIBBERELLIN 2-OXIDASE 2|T1P2.6|T1P2_6 protein taxon:3702 20101129 TIGR TAIR:locus:2198258 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`AGI_LocusCode AT1G78440 ATGA2OX1 enables GO:0052634 TAIR:Publication:1624|PMID:10200325 IDA F AT1G78440 AT1G78440|ATGA2OX1|GA2OX1|Arabidopsis thaliana gibberellin 2-oxidase 1|gibberellin 2-oxidase 1|F3F9.5|F3F9_5 protein taxon:3702 20101129 TIGR TAIR:locus:2032080 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`AGI_LocusCode AT2G34555 ATGA2OX3 enables GO:0052634 TAIR:Publication:1624|PMID:10200325 IDA F AT2G34555 AT2G34555|ATGA2OX3|GA2OX3|gibberellin 2-oxidase 3 protein taxon:3702 20101129 TIGR TAIR:locus:505006289 `

gorule-0000027

Each identifier in GAF is valid

• total: 1

messages

• WARNING - Invalid identifier:GORULE:0000027: INTERPRO not found in list of database names in dbxrefs--`AGI_LocusCode AT5G16840 BPA1 enables GO:0003676 TAIR:Communication:501714663 ISS INTERPRO:IPR000504 F AT5G16840 AT5G16840|BPA1|binding partner of acd11 1|F5E19.180|F5E19_180|BPA1 protein taxon:3702 20190814 TIGR TAIR:locus:2148970 `

gorule-0000061

Allowed gene product to term relations (gp2term)

• total: 11

messages

• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0001025 should be one of BFO:0000050. Repaired to BFO:0000050--`AGI_LocusCode AT5G64040 PSAN located_in GO:0030093 TAIR:Publication:834|PMID:10631267 IPI SWISS-PROT:Q96299 C AT5G64040 AT5G64040|PSAN|MHJ24.2|MHJ24_2|PSI-N protein taxon:3702 20030512 TIGR TAIR:locus:2164371 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0001025 should be one of BFO:0000050. Repaired to BFO:0000050--`AGI_LocusCode AT1G02090 FUS5 located_in GO:0008180 TAIR:Publication:5839|PMID:11019806 TAS C AT1G02090 AT1G02090|FUS5|CSN7|COP15|ATCSN7|FUSCA 5|COP9 SIGNALOSOME SUBUNIT 7|CONSTITUTIVE PHOTOMORPHOGENIC 15|ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7|T7I23.25|T7I23_25 protein taxon:3702 20030417 TIGR TAIR:locus:2205593 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0001025 should be one of BFO:0000050. Repaired to BFO:0000050--`AGI_LocusCode AT1G22920 CSN5A located_in GO:0008180 TAIR:Publication:5839|PMID:11019806 TAS C AT1G22920 AT1G22920|CSN5A|AJH1|COP9 signalosome 5A|ARABIDOPSIS JAB1 HOMOLOG 1|F19G10.12|F19G10_12|PUTATIVE JUN KINASE ACTIVATOR|CSN5 protein taxon:3702 20030417 TIGR TAIR:locus:2017764 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0001025 should be one of BFO:0000050. Repaired to BFO:0000050--`AGI_LocusCode AT1G71230 CSN5B located_in GO:0008180 TAIR:Publication:5839|PMID:11019806 TAS C AT1G71230 AT1G71230|CSN5B|CSN5|AJH2|COP9-signalosome 5B|F3I17.12|F3I17_12 protein taxon:3702 20030417 TIGR TAIR:locus:2032288 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0001025 should be one of BFO:0000050. Repaired to BFO:0000050--`AGI_LocusCode AT2G26990 FUS12 located_in GO:0008180 TAIR:Publication:5839|PMID:11019806 TAS C AT2G26990 AT2G26990|FUS12|ATCSN2|COP12|CSN2|FUSCA 12|CONSTITUTIVE PHOTOMORPHOGENIC 12|T20P8.4|T20P8_4|CSN2 protein taxon:3702 20030417 TIGR TAIR:locus:2059289 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0001025 should be one of BFO:0000050. Repaired to BFO:0000050--`AGI_LocusCode AT3G61140 FUS6 located_in GO:0008180 TAIR:Publication:5839|PMID:11019806 TAS C AT3G61140 AT3G61140|FUS6|ATFUS6|CSN1|COP11|EMB78|ATSK31|SK31|AtCSN1|FUSCA 6|ARABIDOPSIS THALIANA FUSCA 6|COP9 SIGNALOSOME SUBUNIT 1|CONSTITUTIVE PHOTOMORPHOGENIC 11|EMBRYO DEFECTIVE 78|SHAGGY-LIKE KINASE 31|T20K12.40 protein taxon:3702 20030417 TIGR TAIR:locus:2098851 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0001025 should be one of BFO:0000050. Repaired to BFO:0000050--`AGI_LocusCode AT4G14110 COP9 located_in GO:0008180 TAIR:Publication:5839|PMID:11019806 TAS C AT4G14110 AT4G14110|COP9|CSN8|FUS7|EMB143|CONSTITUTIVE PHOTOMORPHOGENIC 9|COP9 SIGNALOSOME SUBUNIT 8|FUSCA 7|EMBRYO DEFECTIVE 143|DL3095C|FCAALL.131|FUSCA PROTEIN FUS7 protein taxon:3702 20030417 TIGR TAIR:locus:2129435 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0001025 should be one of BFO:0000050. Repaired to BFO:0000050--`AGI_LocusCode AT5G14250 COP13 located_in GO:0008180 TAIR:Publication:5839|PMID:11019806 TAS C AT5G14250 AT5G14250|COP13|CSN3|FUS11|CONSTITUTIVE PHOTOMORPHOGENIC 13|COP9 SIGNALOSOME SUBUNIT 3|FUSCA 11|F18O22.40|F18O22_40|CSN3 protein taxon:3702 20030417 TIGR TAIR:locus:2145638 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0001025 should be one of BFO:0000050. Repaired to BFO:0000050--`AGI_LocusCode AT5G42970 COP8 located_in GO:0008180 TAIR:Publication:5839|PMID:11019806 TAS C AT5G42970 AT5G42970|COP8|FUS4|EMB134|COP14|CSN4|FUS8|ATS4|CONSTITUTIVE PHOTOMORPHOGENIC 8|FUSCA 4|EMBRYO DEFECTIVE 134|CONSTITUTIVE PHOTOMORPHOGENIC 14|COP9 SIGNALOSOME SUBUNIT 4|FUSCA 8|MBD2.17|MBD2_17 protein taxon:3702 20030417 TIGR TAIR:locus:2159961 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0001025 should be one of BFO:0000050. Repaired to BFO:0000050--`AGI_LocusCode AT5G56280 CSN6A located_in GO:0008180 TAIR:Publication:5839|PMID:11019806 TAS C AT5G56280 AT5G56280|CSN6A|COP9 signalosome subunit 6A|MXK23.2|MXK23_2 protein taxon:3702 20030512 TIGR TAIR:locus:2177601 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0001025 should be one of BFO:0000050. Repaired to BFO:0000050--`AGI_LocusCode AT1G08550 NPQ1 located_in GO:0030095 TAIR:Publication:501683128|PMID:11058750 TAS C AT1G08550 AT1G08550|NPQ1|AVDE1|non-photochemical quenching 1|ARABIDOPSIS VIOLAXANTHIN DE-EPOXIDASE 1|F22O13.3|F22O13_3|VIOLAXANTHIN DE-EPOXIDASE PRECURSOR protein taxon:3702 20030417 TIGR TAIR:locus:2025510 `