GORULE violations assigned by HGNC-UCL

Contents

gorule-0000020 Violates GORULE:0000020

gorule-0000046 GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms

gorule-0000061 GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0002325, RO:0002432, RO:0001025

MESSAGES

gorule-0000020

Violates GORULE:0000020

• total: 1

messages

• ZFIN ZDB-GENE-040426-1291 ube2nb involved_in GO:0031058 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:P61088 P ubiquitin-conjugating enzyme E2Nb ubc13b|ube2nl|zgc:63901 protein_coding_gene taxon:7955 20070426 HGNC-UCL

gorule-0000046

GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms

• total: 26

messages

• MGI MGI:2137858 Cadm3 enables GO:0042803 MGI:MGI:2675176|PMID:12826663 IPI UniProtKB:Q99N28 F cell adhesion molecule 3 BIgR|Igsf4b|Necl1|Necl-1|SynCAM3|Tsll1 protein_coding_gene taxon:10090 20230221 HGNC-UCL
• MGI MGI:1926483 Nectin1 enables GO:0042803 MGI:MGI:2675176|PMID:12826663 IPI UniProtKB:Q9JKF6 F nectin cell adhesion molecule 1 Cd111|HIgR|HveC|nectin-1|PRR|PRR1|Pvrl1 protein_coding_gene taxon:10090 20230221 HGNC-UCL
• MGI MGI:97822 Nectin2 enables GO:0042803 MGI:MGI:2675176|PMID:12826663 IPI UniProtKB:P32507 F nectin cell adhesion molecule 2 Cd112|MPH|nectin-2|Pvrl2|Pvs protein_coding_gene taxon:10090 20230221 HGNC-UCL
• MGI MGI:1930171 Nectin3 enables GO:0042803 MGI:MGI:2675176|PMID:12826663 IPI UniProtKB:Q9JLB9 F nectin cell adhesion molecule 3 2610301B19Rik|3000002N23Rik|4921513D19Rik|nectin-3|Pvrl3 protein_coding_gene taxon:10090 20230221 HGNC-UCL
• MGI MGI:1891731 Stub1 enables GO:0042803 MGI:MGI:3612351|PMID:16307917 IPI UniProtKB:Q9WUD1 F STIP1 homology and U-Box containing protein 1 0610033N24Rik|2210017D18Rik|2310040B03Rik|CHIP protein_coding_gene taxon:10090 20230221 HGNC-UCL
• UniProtKB Q28997 ADRB2 enables GO:0042803 GO_REF:0000024 ISS UniProtKB:P07550 F Beta-2 adrenergic receptor ADRB2 protein taxon:9823 20060628 HGNC-UCL
• RGD 2061 Adrb3 enables GO:0042803 GO_REF:0000024|RGD:1600115 ISS UniProtKB:P13945 F adrenoceptor beta 3 gene taxon:10116 20060703 HGNC-UCL
• UniProtKB P07550 ADRB2 enables GO:0042803 PMID:15123695 IDA F Beta-2 adrenergic receptor ADRB2|ADRB2R|B2AR protein taxon:9606 20060628 HGNC-UCL
• UniProtKB P13945 ADRB3 enables GO:0042803 PMID:15123695 IDA F Beta-3 adrenergic receptor ADRB3|ADRB3R|B3AR protein taxon:9606 20060628 HGNC-UCL
• UniProtKB P20585 MSH3 NOT|enables GO:0042803 PMID:8942985 IDA F DNA mismatch repair protein Msh3 MSH3|DUC1|DUG protein taxon:9606 20060905 HGNC-UCL
• UniProtKB P21549 AGXT enables GO:0042803 PMID:12899834 IDA F Alanine--glyoxylate aminotransferase AGXT|AGT1|SPAT protein taxon:9606 20060810 HGNC-UCL
• UniProtKB P43246 MSH2 enables GO:0042803 PMID:8942985 IDA F DNA mismatch repair protein Msh2 MSH2 protein taxon:9606 20060905 HGNC-UCL
• UniProtKB Q07812 BAX enables GO:0042803 PMID:16608847 IDA F Apoptosis regulator BAX BAX|BCL2L4 protein taxon:9606 20070301 HGNC-UCL
• UniProtKB Q12904 AIMP1 enables GO:0042803 PMID:11306575 IDA F Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 AIMP1|EMAP2|SCYE1 protein taxon:9606 20071018 HGNC-UCL
• UniProtKB Q15223 NECTIN1 enables GO:0042803 GO_REF:0000024 ISS UniProtKB:Q9JKF6 F Nectin-1 NECTIN1|HVEC|PRR1|PVRL1 protein taxon:9606 20230221 HGNC-UCL
• UniProtKB Q15257 PTPA enables GO:0042803 PMID:16916641 IDA F Serine/threonine-protein phosphatase 2A activator PTPA|PPP2R4 protein taxon:9606 20070426 HGNC-UCL
• UniProtKB Q8N126 CADM3 enables GO:0042803 PMID:12826663 ISS UniProtKB:Q99N28 F Cell adhesion molecule 3 CADM3|IGSF4B|NECL1|SYNCAM3|TSLL1|UNQ225/PRO258 protein taxon:9606 20230221 HGNC-UCL
• UniProtKB Q9NPP4 NLRC4 enables GO:0042803 PMID:15107016 IDA F NLR family CARD domain-containing protein 4 NLRC4|CARD12|CLAN|CLAN1|IPAF|UNQ6189/PRO20215 protein taxon:9606 20060524 HGNC-UCL
• UniProtKB Q9NQS3 NECTIN3 enables GO:0042803 GO_REF:0000024 ISS UniProtKB:Q9JLB9 F Nectin-3 NECTIN3|PRR3|PVRL3 protein taxon:9606 20230221 HGNC-UCL
• UniProtKB Q9ULZ3 PYCARD enables GO:0042803 PMID:15030775 IDA F Apoptosis-associated speck-like protein containing a CARD PYCARD|ASC|CARD5|TMS1 protein taxon:9606 20060525 HGNC-UCL
• UniProtKB Q9Y2G2 CARD8 enables GO:0042803 PMID:15030775 IDA F Caspase recruitment domain-containing protein 8 CARD8|DACAR|KIAA0955|NDPP1 protein taxon:9606 20060525 HGNC-UCL
• UniProtKB Q9Y697 NFS1 enables GO:0042803 PMID:16527810 IDA F Cysteine desulfurase NFS1|NIFS|HUSSY-08 protein taxon:9606 20071022 HGNC-UCL
• UniProtKB P46626 ADRB3 enables GO:0042803 GO_REF:0000024 ISS UniProtKB:P13945 F Beta-3 adrenergic receptor ADRB3 protein taxon:9913 20060703 HGNC-UCL
• UniProtKB Q28044 ADRB2 enables GO:0042803 GO_REF:0000024 ISS UniProtKB:P07550 F Beta-2 adrenergic receptor ADRB2 protein taxon:9913 20060628 HGNC-UCL
• UniProtKB Q8HXK9 PYCARD enables GO:0042803 GO_REF:0000024 ISS UniProtKB:Q9ULZ3 F Apoptosis-associated speck-like protein containing a CARD PYCARD|ASC protein taxon:9913 20060525 HGNC-UCL
• UniProtKB P54833 ADRB2 enables GO:0042803 GO_REF:0000024 ISS UniProtKB:P07550 F Beta-2 adrenergic receptor ADRB2 protein taxon:9615 20060628 HGNC-UCL

gorule-0000061

GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0002325, RO:0002432, RO:0001025

• total: 11

messages

• MGI MGI:1352460 Nr0b1 part_of GO:0042788 MGI:MGI:3694160|PMID:10848616 IDA C nuclear receptor subfamily 0, group B, member 1 Ahc|Ahch|AHX|Dax1|DAX-1 protein_coding_gene taxon:10090 20061201 HGNC-UCL
• MGI MGI:1353472 Rpl7a part_of GO:0042788 MGI:MGI:3694160|PMID:10848616 IDA C ribosomal protein L7A Surf-3|surfeit 3 protein_coding_gene taxon:10090 20061201 HGNC-UCL
• UniProtKB P79386 NR0B1 part_of GO:0042788 GO_REF:0000024 ISS UniProtKB:P51843 C Nuclear receptor subfamily 0 group B member 1 NR0B1|AHCH|DAX1 protein taxon:9823 20061201 HGNC-UCL
• RGD 62028 Nr0b1 part_of GO:0042788 GO_REF:0000024|RGD:1600115 ISS UniProtKB:P51843 C nuclear receptor subfamily 0, group B, member 1 gene taxon:10116 20061201 HGNC-UCL
• UniProtKB P51843 NR0B1 part_of GO:0042788 PMID:10848616 IDA C Nuclear receptor subfamily 0 group B member 1 NR0B1|AHC|DAX1 protein taxon:9606 20061201 HGNC-UCL
• UniProtKB P62424 RPL7A part_of GO:0042788 PMID:10848616 IDA C 60S ribosomal protein L7a RPL7A|SURF-3|SURF3 protein taxon:9606 20061201 HGNC-UCL
• UniProtKB Q7Z417 NUFIP2 part_of GO:0042788 PMID:12837692 IDA C FMR1-interacting protein NUFIP2 NUFIP2|KIAA1321|PIG1 protein taxon:9606 20061204 HGNC-UCL
• UniProtKB Q92900 UPF1 located_in GO:0000785 PMID:16488880 IDA C Regulator of nonsense transcripts 1 UPF1|KIAA0221|RENT1 protein taxon:9606 20060317 HGNC-UCL
• UniProtKB Q9BVW5 TIPIN located_in GO:0000785 PMID:17102137 IDA C TIMELESS-interacting protein TIPIN protein taxon:9606 20070719 HGNC-UCL
• UniProtKB Q9UNS1 TIMELESS located_in GO:0000785 PMID:17102137 IDA C Protein timeless homolog TIMELESS|TIM|TIM1|TIMELESS1 protein taxon:9606 20070719 HGNC-UCL
• UniProtKB P60896 SEM1 colocalizes_with GO:0032039 PMID:16239144 IDA C 26S proteasome complex subunit SEM1 SEM1|C7orf76|DSS1|SHFDG1|SHFM1 protein taxon:9606 20060726 HGNC-UCL UniProtKB:P60896