GORULE violations assigned by ParkinsonsUK-UCL

Contents

gorule-0000008 No annotations should be made to uninformative high level terms

gorule-0000020 Automatic repair of annotations to merged or obsoleted terms

gorule-0000022 Check for, and filter, annotations made to retracted publications

gorule-0000027 Each identifier in GAF is valid

gorule-0000046 The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

MESSAGES

gorule-0000008

No annotations should be made to uninformative high level terms

• total: 28

messages

• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:98958 Wnt5a involved_in GO:0032092 PMID:23109420 IDA P Protein Wnt-5a protein taxon:10090 20170410 ParkinsonsUK-UCL has_input(UniProtKB:Q13009),part_of(GO:0016055),occurs_in(CL:0000700)|has_input(UniProtKB:Q92997),part_of(GO:0016055),occurs_in(CL:0000700) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:99441 Ckmt1 involved_in GO:0032091 PMID:21370995 IDA P Creatine kinase U-type, mitochondrial protein taxon:10090 20140728 ParkinsonsUK-UCL has_input(UniProtKB:P21796),has_input(UniProtKB:P12236) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:1914740 Ufl1 involved_in GO:0032092 PMID:21494687 TAS P E3 UFM1-protein ligase 1 protein taxon:10090 20161103 ParkinsonsUK-UCL has_input(UniProtKB:P61961),has_input(UniProtKB:Q80WW9) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:1920431 Nfatc4 involved_in GO:0032091 PMID:21880741 IDA P Nuclear factor of activated T-cells, cytoplasmic 4 protein taxon:10090 20151214 ParkinsonsUK-UCL has_input(UniProtKB:P51141),has_input(UniProtKB:Q02248),part_of(GO:0030178) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:1920431 Nfatc4 involved_in GO:0032091 PMID:21880741 IDA P Nuclear factor of activated T-cells, cytoplasmic 4 protein taxon:10090 20170410 ParkinsonsUK-UCL has_input(UniProtKB:Q61062),occurs_in(GO:0005634),part_of(GO:0030178)|has_input(UniProtKB:Q02248),occurs_in(GO:0005634),part_of(GO:0030178) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:1891731 Stub1 involved_in GO:0032091 PMID:12150907 IDA P E3 ubiquitin-protein ligase CHIP protein taxon:10090 20140813 ParkinsonsUK-UCL part_of(GO:0031398) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB O15371 EIF3D involved_in GO:1902416 PMID:24092755 IPI UniProtKB:P60228,UniProtKB:Q04637,UniProtKB:Q99613 P Eukaryotic translation initiation factor 3 subunit D EIF3D|EIF3S7 protein taxon:9606 20161031 ParkinsonsUK-UCL has_input(UniProtKB:Q04637) UniProtKB:O15371 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB O60260 PRKN involved_in GO:0032092 PMID:26911690 IMP P E3 ubiquitin-protein ligase parkin PRKN|PARK2 protein taxon:9606 20160921 ParkinsonsUK-UCL has_input(UniProtKB:Q96NA2),has_input(UniProtKB:P51149) UniProtKB:O60260 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB O60260 PRKN involved_in GO:0043388 PMID:17314283 IDA P E3 ubiquitin-protein ligase parkin PRKN|PARK2 protein taxon:9606 20140903 ParkinsonsUK-UCL UniProtKB:O60260 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB O94907 DKK1 involved_in GO:0032091 PMID:20093360 IDA P Dickkopf-related protein 1 DKK1|UNQ492/PRO1008 protein taxon:9606 20170410 ParkinsonsUK-UCL has_input(UniProtKB:O75581)|has_input(UniProtKB:O14905)|has_input(UniProtKB:P56704)|part_of(GO:1904723) UniProtKB:O94907 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB O95295 SNAPIN involved_in GO:0043393 PMID:23949442 IMP P SNARE-associated protein Snapin SNAPIN|BLOC1S7|SNAP25BP|SNAPAP protein taxon:9606 20140326 ParkinsonsUK-UCL has_input(UniProtKB:P21707),occurs_in(UBERON:0000955) UniProtKB:O95295 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P21675 TAF1 involved_in GO:0032092 PMID:17237821 IDA P Transcription initiation factor TFIID subunit 1 TAF1|BA2R|CCG1|CCGS|TAF2A protein taxon:9606 20161005 ParkinsonsUK-UCL has_input(UniProtKB:Q00987),has_input(UniProtKB:P04637) UniProtKB:P21675 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P23560 BDNF involved_in GO:1900122 PMID:12130635 IDA P Neurotrophic factor BDNF precursor form BDNF protein taxon:9606 20161027 ParkinsonsUK-UCL has_input(UniProtKB:P46459) UniProtKB:P23560 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P49674 CSNK1E involved_in GO:0032091 PMID:23109420 IDA P Casein kinase I isoform epsilon CSNK1E protein taxon:9606 20151208 ParkinsonsUK-UCL has_input(UniProtKB:Q13009),has_input(UniProtKB:Q92997) UniProtKB:P49674 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P60228 EIF3E involved_in GO:1902416 PMID:24092755 IPI UniProtKB:O15371,UniProtKB:Q04637,UniProtKB:Q99613 P Eukaryotic translation initiation factor 3 subunit E EIF3E|EIF3S6|INT6 protein taxon:9606 20161031 ParkinsonsUK-UCL has_input(UniProtKB:Q04637) UniProtKB:P60228 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P78344 EIF4G2 involved_in GO:0009059 PMID:18426977 IGI UniProtKB:Q04637 P Eukaryotic translation initiation factor 4 gamma 2 EIF4G2|DAP5|OK/SW-cl.75 protein taxon:9606 20161007 ParkinsonsUK-UCL has_input(UniProtKB:P06730) UniProtKB:P78344 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q04637 EIF4G1 involved_in GO:0009059 PMID:18426977 IGI UniProtKB:P78344 P Eukaryotic translation initiation factor 4 gamma 1 EIF4G1|EIF4F|EIF4G|EIF4GI protein taxon:9606 20161007 ParkinsonsUK-UCL has_input(UniProtKB:P06730) UniProtKB:Q04637 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q04637 EIF4G1 involved_in GO:1905612 PMID:23409027 IDA P Eukaryotic translation initiation factor 4 gamma 1 EIF4G1|EIF4F|EIF4G|EIF4GI protein taxon:9606 20161028 ParkinsonsUK-UCL has_input(UniProtKB:Q9UKV8),causally_upstream_of(GO:0035278) UniProtKB:Q04637 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q13009 TIAM1 involved_in GO:0032092 PMID:23109420 IDA P Rho guanine nucleotide exchange factor TIAM1 TIAM1 protein taxon:9606 20151208 ParkinsonsUK-UCL has_input(UniProtKB:P63000),has_input(UniProtKB:O14641),part_of(GO:2000050) UniProtKB:Q13009 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q13526 PIN1 involved_in GO:0032091 PMID:11533658 IDA P Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 PIN1 protein taxon:9606 20160114 ParkinsonsUK-UCL has_input(UniProtKB:P25054),has_input(UniProtKB:P35222) UniProtKB:Q13526 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q5S007 LRRK2 involved_in GO:0032091 PMID:23949442 IMP P Leucine-rich repeat serine/threonine-protein kinase 2 LRRK2|PARK8 protein taxon:9606 20140326 ParkinsonsUK-UCL has_input(UniProtKB:P60879),has_input(UniProtKB:Q9Z266),occurs_in(UBERON:0000955) UniProtKB:Q5S007 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q5S007 LRRK2 involved_in GO:0032092 PMID:21370995 IDA P Leucine-rich repeat serine/threonine-protein kinase 2 LRRK2|PARK8 protein taxon:9606 20140728 ParkinsonsUK-UCL has_input(UniProtKB:P21796),has_input(UniProtKB:P12236) UniProtKB:Q5S007 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q96D46 NMD3 involved_in GO:0032092 PMID:12724356 IMP P 60S ribosomal export protein NMD3 NMD3|CGI-07 protein taxon:9606 20170626 ParkinsonsUK-UCL has_input(UniProtKB:O14980),has_input(UniProtKB:P62826) UniProtKB:Q96D46 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q96HY6 DDRGK1 involved_in GO:1905636 PMID:23675531 IMP P DDRGK domain-containing protein 1 DDRGK1|C20orf116|UFBP1 protein taxon:9606 20161103 ParkinsonsUK-UCL has_input(UniProtKB:Q04206) UniProtKB:Q96HY6 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q99613 EIF3C involved_in GO:1902416 PMID:24092755 IPI UniProtKB:O15371,UniProtKB:P60228,UniProtKB:Q04637 P Eukaryotic translation initiation factor 3 subunit C EIF3C|EIF3S8 protein taxon:9606 20161031 ParkinsonsUK-UCL has_input(UniProtKB:Q04637) UniProtKB:Q99613 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q9H1E3 NUCKS1 involved_in GO:1990968 PMID:25116364 IMP P Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 NUCKS1|NUCKS|JC7 protein taxon:9606|taxon:11706 20160721 ParkinsonsUK-UCL has_input(UniProtKB:P04608),part_of(GO:0043923) UniProtKB:Q9H1E3 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q9NYF0 DACT1 involved_in GO:0032091 PMID:18936100 IGI UniProtKB:P35222,UniProtKB:Q9UJU2 P Dapper homolog 1 DACT1|DPR1|HNG3 protein taxon:9606 20170410 ParkinsonsUK-UCL has_input(UniProtKB:Q9UJU2),part_of(GO:0000122),part_of(GO:0090090),occurs_in(GO:0005634)|has_input(UniProtKB:P35222),part_of(GO:0000122),part_of(GO:0090090),occurs_in(GO:0005634) UniProtKB:Q9NYF0 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q9NYF0 DACT1 involved_in GO:0032092 PMID:18936100 IGI UniProtKB:Q13547,UniProtKB:Q9UJU2 P Dapper homolog 1 DACT1|DPR1|HNG3 protein taxon:9606 20170410 ParkinsonsUK-UCL has_input(UniProtKB:Q13547),part_of(GO:0000122),part_of(GO:0090090)|has_input(UniProtKB:Q9UJU2),part_of(GO:0000122),part_of(GO:0090090) UniProtKB:Q9NYF0 `

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 9

messages

• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB O75807 PPP1R15A enables GO:0019888 PMID:11564868 IC GO:0008157|GO:0032515|GO:0032516 F Protein phosphatase 1 regulatory subunit 15A PPP1R15A|GADD34 protein taxon:9606 20141110 ParkinsonsUK-UCL UniProtKB:O75807 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P31749 AKT1 enables GO:0004674 PMID:21711983 TAS F RAC-alpha serine/threonine-protein kinase AKT1|PKB|RAC protein taxon:9606 20160215 ParkinsonsUK-UCL has_input(UniProtKB:P49841),part_of(GO:0100002)|has_input(UniProtKB:P49840),part_of(GO:0100002) UniProtKB:P31749 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB O75807 PPP1R15A enables GO:0072542 PMID:21518769 IDA F Protein phosphatase 1 regulatory subunit 15A PPP1R15A|GADD34 protein taxon:9606 20240721 ParkinsonsUK-UCL part_of(GO:1902310) UniProtKB:O75807 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB O75807 PPP1R15A involved_in GO:0032058 PMID:12556489 IC GO:1902310 P Protein phosphatase 1 regulatory subunit 15A PPP1R15A|GADD34 protein taxon:9606 20141118 ParkinsonsUK-UCL UniProtKB:O75807 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`MGI MGI:98953 Wnt1 enables GO:0048018 PMID:21752258 IC GO:1903204 F Proto-oncogene Wnt-1 protein taxon:10090 20160914 ParkinsonsUK-UCL has_input(UniProtKB:O70421),part_of(GO:0060070) `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`MGI MGI:1355296 Prkn involved_in GO:0032436 PMID:23858059 IMP P E3 ubiquitin-protein ligase parkin protein taxon:10090 20140729 ParkinsonsUK-UCL has_input(UniProtKB:Q8VBV4),part_of(GO:1903204),occurs_in(CL:0000530),occurs_in(UBERON:0000955) `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P35638 DDIT3 enables GO:0003700 PMID:15322075 IC GO:0032993|GO:1990440 F DNA damage-inducible transcript 3 protein DDIT3|CHOP|CHOP10|GADD153 protein taxon:9606 20150122 ParkinsonsUK-UCL has_input(UniProtKB:O14763),part_of(GO:1990440) UniProtKB:P35638 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P35638 DDIT3 involved_in GO:0043525 PMID:22761832 IC GO:1990440 P DNA damage-inducible transcript 3 protein DDIT3|CHOP|CHOP10|GADD153 protein taxon:9606 20150122 ParkinsonsUK-UCL part_of(GO:0034976) UniProtKB:P35638 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P35638 DDIT3 involved_in GO:1902237 PMID:22761832 IC GO:1990440 P DNA damage-inducible transcript 3 protein DDIT3|CHOP|CHOP10|GADD153 protein taxon:9606 20150122 ParkinsonsUK-UCL occurs_in(CL:0000540) UniProtKB:P35638 `

gorule-0000022

Check for, and filter, annotations made to retracted publications

• total: 22

messages

• ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`MGI MGI:109326 Bnip3 enables GO:0005515 PMID:18281291 IPI UniProtKB:P10417 F BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 protein taxon:10090 20150114 ParkinsonsUK-UCL part_of(GO:0071456) `
• ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`MGI MGI:109326 Bnip3 involved_in GO:0010821 PMID:18281291 IMP P BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 protein taxon:10090 20150114 ParkinsonsUK-UCL `
• ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`MGI MGI:109326 Bnip3 involved_in GO:0043066 PMID:18281291 IGI UniProtKB:Q61221 P BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 protein taxon:10090 20150114 ParkinsonsUK-UCL part_of(GO:0071456) `
• ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`MGI MGI:109326 Bnip3 involved_in GO:1903715 PMID:18281291 IMP P BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 protein taxon:10090 20150114 ParkinsonsUK-UCL `
• ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`MGI MGI:109326 Bnip3 involved_in GO:2000378 PMID:18281291 IGI UniProtKB:Q61221 P BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 protein taxon:10090 20150114 ParkinsonsUK-UCL part_of(GO:0071456) `
• ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`MGI MGI:1891828 Becn1 enables GO:0005515 PMID:18281291 IPI UniProtKB:P10417 F Beclin-1 protein taxon:10090 20150114 ParkinsonsUK-UCL part_of(GO:0071456) `
• ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`MGI MGI:1891828 Becn1 involved_in GO:0000423 PMID:18281291 IMP P Beclin-1 protein taxon:10090 20230928 ParkinsonsUK-UCL `
• ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`MGI MGI:1891828 Becn1 involved_in GO:0043066 PMID:18281291 IMP P Beclin-1 protein taxon:10090 20150114 ParkinsonsUK-UCL part_of(GO:0071456) `
• ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`MGI MGI:1891828 Becn1 involved_in GO:2000378 PMID:18281291 IMP UniProtKB:Q61221 P Beclin-1 protein taxon:10090 20150114 ParkinsonsUK-UCL part_of(GO:0071456) `
• ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`MGI MGI:88138 Bcl2 enables GO:0005515 PMID:18281291 IPI UniProtKB:O55003 F Apoptosis regulator Bcl-2 protein taxon:10090 20150114 ParkinsonsUK-UCL part_of(GO:0071456) `
• ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`MGI MGI:88138 Bcl2 enables GO:0005515 PMID:18281291 IPI UniProtKB:O88597 F Apoptosis regulator Bcl-2 protein taxon:10090 20150114 ParkinsonsUK-UCL part_of(GO:0071456) `
• ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`MGI MGI:88138 Bcl2 involved_in GO:0010507 PMID:18281291 IMP P Apoptosis regulator Bcl-2 protein taxon:10090 20150114 ParkinsonsUK-UCL part_of(GO:0071456) `
• ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`MGI MGI:88138 Bcl2 involved_in GO:2000378 PMID:18281291 IMP UniProtKB:Q61221 P Apoptosis regulator Bcl-2 protein taxon:10090 20150114 ParkinsonsUK-UCL part_of(GO:0071456) `
• ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`MGI MGI:106918 Hif1a involved_in GO:0010468 PMID:18281291 IMP P Hypoxia-inducible factor 1-alpha protein taxon:10090 20151116 ParkinsonsUK-UCL has_input(UniProtKB:O55003),part_of(GO:0071456)|has_input(UniProtKB:O55003),occurs_in(UBERON:0002048) `
• ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`MGI MGI:106918 Hif1a involved_in GO:0010508 PMID:18281291 IMP P Hypoxia-inducible factor 1-alpha protein taxon:10090 20151116 ParkinsonsUK-UCL part_of(GO:0071456)|part_of(GO:0071456),has_input(UniProtKB:Q99J83)|part_of(GO:0071456),has_input(UniProtKB:O88597)|part_of(GO:0071456),has_input(UniProtKB:O55003) `
• ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`MGI MGI:106918 Hif1a involved_in GO:0043066 PMID:18281291 IMP P Hypoxia-inducible factor 1-alpha protein taxon:10090 20150114 ParkinsonsUK-UCL part_of(GO:0071456) `
• ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`MGI MGI:106918 Hif1a involved_in GO:1901526 PMID:18281291 IMP P Hypoxia-inducible factor 1-alpha protein taxon:10090 20230928 ParkinsonsUK-UCL part_of(GO:0071456),has_input(UniProtKB:Q99J83),has_input(UniProtKB:O88597) `
• ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`MGI MGI:106918 Hif1a involved_in GO:1903715 PMID:18281291 IMP P Hypoxia-inducible factor 1-alpha protein taxon:10090 20151116 ParkinsonsUK-UCL part_of(GO:0071456),has_input(UniProtKB:Q99J83),has_input(UniProtKB:O88597) `
• ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`MGI MGI:106918 Hif1a involved_in GO:2000378 PMID:18281291 IMP P Hypoxia-inducible factor 1-alpha protein taxon:10090 20150114 ParkinsonsUK-UCL part_of(GO:0071456) `
• ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`MGI MGI:1277186 Atg5 involved_in GO:0000423 PMID:18281291 IMP P Autophagy protein 5 protein taxon:10090 20230928 ParkinsonsUK-UCL `
• ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`MGI MGI:1277186 Atg5 involved_in GO:0043066 PMID:18281291 IMP P Autophagy protein 5 protein taxon:10090 20150114 ParkinsonsUK-UCL part_of(GO:0071456) `
• ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`MGI MGI:1277186 Atg5 involved_in GO:2000378 PMID:18281291 IMP UniProtKB:Q61221 P Autophagy protein 5 protein taxon:10090 20150114 ParkinsonsUK-UCL part_of(GO:0071456) `

gorule-0000027

Each identifier in GAF is valid

• total: 45

messages

• WARNING - Invalid identifier:GORULE:0000027: 107363 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:107363 Stxbp1 enables GO:0017075 PMID:18703708 IDA F Syntaxin-binding protein 1 protein taxon:10090 20161114 ParkinsonsUK-UCL occurs_in(UBERON:0000955) `
• WARNING - Invalid identifier:GORULE:0000027: 107363 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:107363 Stxbp1 involved_in GO:0006904 PMID:18703708 IMP P Syntaxin-binding protein 1 protein taxon:10090 20160719 ParkinsonsUK-UCL occurs_in(CL:0000166) `
• WARNING - Invalid identifier:GORULE:0000027: 107363 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:107363 Stxbp1 involved_in GO:0031629 PMID:16782817 TAS P Syntaxin-binding protein 1 protein taxon:10090 20140903 ParkinsonsUK-UCL `
• WARNING - Invalid identifier:GORULE:0000027: 107558 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:107558 Sema3a involved_in GO:0008045 PMID:18804103 IMP P Semaphorin-3A protein taxon:10090 20170823 ParkinsonsUK-UCL results_in_movement_of(CL:0005025) `
• WARNING - Invalid identifier:GORULE:0000027: 107558 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:107558 Sema3a involved_in GO:0021612 PMID:18804103 IMP P Semaphorin-3A protein taxon:10090 20140515 ParkinsonsUK-UCL results_in_morphogenesis_of(CL:0005023)|results_in_morphogenesis_of(CL:0005025) `
• WARNING - Invalid identifier:GORULE:0000027: 107558 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:107558 Sema3a involved_in GO:0021637 PMID:18804103 IMP P Semaphorin-3A protein taxon:10090 20140514 ParkinsonsUK-UCL results_in_morphogenesis_of(UBERON:0000375)|results_in_morphogenesis_of(UBERON:0000377)|results_in_morphogenesis_of(UBERON:0000348) `
• WARNING - Invalid identifier:GORULE:0000027: 107558 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:107558 Sema3a involved_in GO:0021785 PMID:18804103 IMP P Semaphorin-3A protein taxon:10090 20140515 ParkinsonsUK-UCL `
• WARNING - Invalid identifier:GORULE:0000027: 107558 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:107558 Sema3a involved_in GO:0036486 PMID:19386662 IMP P Semaphorin-3A protein taxon:10090 20140902 ParkinsonsUK-UCL `
• WARNING - Invalid identifier:GORULE:0000027: 107558 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:107558 Sema3a involved_in GO:0061551 PMID:18356247 IMP P Semaphorin-3A protein taxon:10090 20140612 ParkinsonsUK-UCL `
• WARNING - Invalid identifier:GORULE:0000027: 107558 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:107558 Sema3a involved_in GO:0071526 PMID:18804103 IMP P Semaphorin-3A protein taxon:10090 20230824 ParkinsonsUK-UCL occurs_in(CL:0005025),part_of(GO:0008045)|occurs_in(CL:0005023),part_of(GO:0021785)|part_of(GO:0021612)|part_of(GO:0021637) `
• WARNING - Invalid identifier:GORULE:0000027: 107558 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:107558 Sema3a involved_in GO:1901166 PMID:18356247 IMP P Semaphorin-3A protein taxon:10090 20140612 ParkinsonsUK-UCL results_in_movement_of(CL:0000008) `
• WARNING - Invalid identifier:GORULE:0000027: 107558 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:107558 Sema3a involved_in GO:1901166 PMID:19386662 IMP P Semaphorin-3A protein taxon:10090 20140709 ParkinsonsUK-UCL results_in_movement_of(CL:0000011) `
• WARNING - Invalid identifier:GORULE:0000027: 107558 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:107558 Sema3a involved_in GO:1903375 PMID:18356247 IMP P Semaphorin-3A protein taxon:10090 20140826 ParkinsonsUK-UCL `
• WARNING - Invalid identifier:GORULE:0000027: 109583 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:109583 Pten involved_in GO:0048681 PMID:26203138 IMP P Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN protein taxon:10090 20160308 ParkinsonsUK-UCL occurs_in(CL:0010012) `
• WARNING - Invalid identifier:GORULE:0000027: 1312922 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:1312922 Casp12 enables GO:0004197 PMID:12097332 IDA F Caspase-12 protein taxon:10090 20150330 ParkinsonsUK-UCL has_input(UniProtKB:Q8C3Q9)|has_input(UniProtKB:O08736) `
• WARNING - Invalid identifier:GORULE:0000027: 1312922 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:1312922 Casp12 involved_in GO:0070059 PMID:10638761 IMP P Caspase-12 protein taxon:10090 20150226 ParkinsonsUK-UCL occurs_in(CL:0002306) `
• WARNING - Invalid identifier:GORULE:0000027: 1312922 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:1312922 Casp12 involved_in GO:0070059 PMID:12097332 IDA P Caspase-12 protein taxon:10090 20150330 ParkinsonsUK-UCL `
• WARNING - Invalid identifier:GORULE:0000027: 1312922 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:1312922 Casp12 involved_in GO:0097264 PMID:12097332 IDA P Caspase-12 protein taxon:10090 20150330 ParkinsonsUK-UCL `
• WARNING - Invalid identifier:GORULE:0000027: 1312922 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:1312922 Casp12 located_in GO:0005783 PMID:10638761 IDA C Caspase-12 protein taxon:10090 20150226 ParkinsonsUK-UCL `
• WARNING - Invalid identifier:GORULE:0000027: 1926157 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:1926157 Atf6 located_in GO:0005634 PMID:14559994 NAS C Cyclic AMP-dependent transcription factor ATF-6 alpha protein taxon:10090 20141113 ParkinsonsUK-UCL `
• WARNING - Invalid identifier:GORULE:0000027: 1926157 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:1926157 Atf6 located_in GO:0005783 PMID:14559994 NAS C Cyclic AMP-dependent transcription factor ATF-6 alpha protein taxon:10090 20141113 ParkinsonsUK-UCL `
• WARNING - Invalid identifier:GORULE:0000027: 2443564 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:2443564 Ambra1 located_in GO:0005829 PMID:21753002 IDA C Activating molecule in BECN1-regulated autophagy protein 1 protein taxon:10090 20141111 ParkinsonsUK-UCL part_of(CL:0000540),part_of(UBERON:0001891)|part_of(CL:0002613)|part_of(CL:0000700) `
• WARNING - Invalid identifier:GORULE:0000027: 2446244 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:2446244 Setd1a contributes_to GO:0042800 PMID:27141965 NAS F Histone-lysine N-methyltransferase SETD1A protein taxon:10090 20161107 ParkinsonsUK-UCL part_of(GO:0045646) `
• WARNING - Invalid identifier:GORULE:0000027: 2446244 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:2446244 Setd1a involved_in GO:0010628 PMID:27141965 IMP P Histone-lysine N-methyltransferase SETD1A protein taxon:10090 20161107 ParkinsonsUK-UCL part_of(GO:0045646) `
• WARNING - Invalid identifier:GORULE:0000027: 2446244 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:2446244 Setd1a involved_in GO:0045646 PMID:27141965 IMP P Histone-lysine N-methyltransferase SETD1A protein taxon:10090 20161107 ParkinsonsUK-UCL `
• WARNING - Invalid identifier:GORULE:0000027: 2446244 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:2446244 Setd1a involved_in GO:1902275 PMID:27141965 IDA P Histone-lysine N-methyltransferase SETD1A protein taxon:10090 20161107 ParkinsonsUK-UCL `
• WARNING - Invalid identifier:GORULE:0000027: 2446244 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:2446244 Setd1a part_of GO:0048188 PMID:27141965 TAS C Histone-lysine N-methyltransferase SETD1A protein taxon:10090 20161107 ParkinsonsUK-UCL `
• WARNING - Invalid identifier:GORULE:0000027: 2654703 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:2654703 Otud7b enables GO:0005515 PMID:21097510 IPI UniProtKB:Q99497 F OTU domain-containing protein 7B protein taxon:10090 20140603 ParkinsonsUK-UCL `
• WARNING - Invalid identifier:GORULE:0000027: 2654703 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:2654703 Otud7b involved_in GO:0000122 PMID:21097510 IDA P OTU domain-containing protein 7B protein taxon:10090 20140603 ParkinsonsUK-UCL has_input(UniProtKB:P13597) `
• WARNING - Invalid identifier:GORULE:0000027: 10047191 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1303073 Xbp1 involved_in GO:1902236 PMID:20625543|RGD:10047191 IMP P X-box binding protein 1 gene taxon:10116 20150210 ParkinsonsUK-UCL `
• WARNING - Invalid identifier:GORULE:0000027: 10047288 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1305769 Pink1 involved_in GO:0010629 PMID:24475098|RGD:10047288 IMP P PTEN induced kinase 1 gene taxon:10116 20140908 ParkinsonsUK-UCL has_input(UniProtKB:Q5QJC9) UniProtKB:D3Z9M9 `
• WARNING - Invalid identifier:GORULE:0000027: 10412301 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1303075 Hsp90ab1 enables GO:0005515 PMID:18644871|RGD:10412301 IPI UniProtKB:P17046 F heat shock protein 90 alpha family class B member 1 gene taxon:10116 20160615 ParkinsonsUK-UCL `
• WARNING - Invalid identifier:GORULE:0000027: 10412301 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1303075 Hsp90ab1 located_in GO:0005765 PMID:18644871|RGD:10412301 IDA C heat shock protein 90 alpha family class B member 1 gene taxon:10116 20151116 ParkinsonsUK-UCL `
• WARNING - Invalid identifier:GORULE:0000027: 10412301 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1303075 Hsp90ab1 involved_in GO:0061635 PMID:18644871|RGD:10412301 NAS P heat shock protein 90 alpha family class B member 1 gene taxon:10116 20220810 ParkinsonsUK-UCL has_input(UniProtKB:P17046),part_of(GO:0061684),occurs_in(GO:0005765) `
• WARNING - Invalid identifier:GORULE:0000027: 10412301 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1303075 Hsp90ab1 involved_in GO:0061684 PMID:18644871|RGD:10412301 NAS P heat shock protein 90 alpha family class B member 1 gene taxon:10116 20151116 ParkinsonsUK-UCL `
• WARNING - Invalid identifier:GORULE:0000027: 10412301 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1303075 Hsp90ab1 enables GO:0140597 PMID:18644871|RGD:10412301 NAS F heat shock protein 90 alpha family class B member 1 gene taxon:10116 20210519 ParkinsonsUK-UCL `
• WARNING - Invalid identifier:GORULE:0000027: 11059577 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1305777 Inpp5f involved_in GO:0033137 PMID:26908121|RGD:11059577 IMP P inositol polyphosphate-5-phosphatase F gene taxon:10116 20160518 ParkinsonsUK-UCL has_input(PR:000029189),occurs_in(CL:0000746) `
• WARNING - Invalid identifier:GORULE:0000027: 11059577 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1305777 Inpp5f involved_in GO:0046627 PMID:26908121|RGD:11059577 NAS P inositol polyphosphate-5-phosphatase F gene taxon:10116 20160518 ParkinsonsUK-UCL occurs_in(CL:0000746) `
• WARNING - Invalid identifier:GORULE:0000027: 11059577 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1305777 Inpp5f involved_in GO:0051898 PMID:26908121|RGD:11059577 IC GO:0033137 P inositol polyphosphate-5-phosphatase F gene taxon:10116 20170824 ParkinsonsUK-UCL has_input(PR:000029189),occurs_in(CL:0000746) `
• WARNING - Invalid identifier:GORULE:0000027: 11535114 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1305058 Rab34 involved_in GO:0050714 PMID:19641095|RGD:11535114 IMP P RAB34, member RAS oncogene family gene taxon:10116 20160912 ParkinsonsUK-UCL `
• WARNING - Invalid identifier:GORULE:0000027: 11535114 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1305058 Rab34 involved_in GO:0071333 PMID:19641095|RGD:11535114 IMP P RAB34, member RAS oncogene family gene taxon:10116 20160912 ParkinsonsUK-UCL `
• WARNING - Invalid identifier:GORULE:0000027: 11536096 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1305648 Fbxo7 acts_upstream_of GO:0043524 PMID:26310625|RGD:11536096 IMP P F-box protein 7 gene taxon:10116 20230331 ParkinsonsUK-UCL occurs_in(CL:0000700) `
• WARNING - Invalid identifier:GORULE:0000027: 11536096 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1305648 Fbxo7 involved_in GO:1901526 PMID:26310625|RGD:11536096 IMP P F-box protein 7 gene taxon:10116 20230928 ParkinsonsUK-UCL occurs_in(CL:0000700) `
• WARNING - Invalid identifier:GORULE:0000027: 11567254 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1304890 Ufm1 involved_in GO:0043066 PMID:21494687|RGD:11567254 IMP P ubiquitin-fold modifier 1 gene taxon:10116 20161103 ParkinsonsUK-UCL part_of(GO:0034976),occurs_in(CL:0000169) `
• WARNING - Invalid identifier:GORULE:0000027: 11567254 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1304890 Ufm1 NOT|involved_in GO:0061178 PMID:21494687|RGD:11567254 IMP P ubiquitin-fold modifier 1 gene taxon:10116 20161103 ParkinsonsUK-UCL `

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

• total: 7

messages

• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:1921256 Dnm1l enables GO:0042803 PMID:20585624 IPI UniProtKB:Q8K1M6 F Dynamin-1-like protein protein taxon:10090 20230309 ParkinsonsUK-UCL `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:1352504 Hip1r enables GO:0042803 PMID:11564758 IPI UniProtKB:Q9JKY5 F Huntingtin-interacting protein 1-related protein protein taxon:10090 20230309 ParkinsonsUK-UCL `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:1352504 Hip1r enables GO:0042803 PMID:15533940 IPI UniProtKB:Q9JKY5 F Huntingtin-interacting protein 1-related protein protein taxon:10090 20230309 ParkinsonsUK-UCL `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:1352504 Hip1r enables GO:0042803 PMID:18790740 IPI UniProtKB:Q9JKY5 F Huntingtin-interacting protein 1-related protein protein taxon:10090 20230309 ParkinsonsUK-UCL `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`RGD 2326 Cebpa enables GO:0042803 PMID:8657121|RGD:1599740 IPI UniProtKB:P05554 F CCAAT/enhancer binding protein alpha gene taxon:10116 20141016 ParkinsonsUK-UCL `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`RGD 619781 Erp29 enables GO:0042803 PMID:9714535|RGD:10047223 IPI UniProtKB:P52555 F endoplasmic reticulum protein 29 gene taxon:10116 20230309 ParkinsonsUK-UCL `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`RGD 68397 Syt4 enables GO:0042803 PMID:10397765|RGD:11535116 IPI UniProtKB:P50232 F synaptotagmin 4 gene taxon:10116 20230309 ParkinsonsUK-UCL `