GORULE violations assigned by SynGO

Contents

gorule-0000006 GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology

gorule-0000013 GORULE:0000013: Taxon-appropriate annotation check

MESSAGES

gorule-0000006

GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology

• total: 21

messages

• MGI MGI:1338801 Cyfip1 enables GO:0045182 MGI:MGI:5515833|PMID:24050404 IEP F cytoplasmic FMR1 interacting protein 1 E030028J09Rik|l(7)1Rl|l7Rl1|P140SRA-1|pl-1|Shyc|Sra-1 protein_coding_gene taxon:10090 20220928 SynGO part_of(GO:0099578),occurs_in(UBERON:0001950)
• MGI MGI:95305 Eif4e enables GO:0045182 MGI:MGI:5473729|PMID:23263185 IEP F eukaryotic translation initiation factor 4E eIF-4E|If4e protein_coding_gene taxon:10090 20220928 SynGO part_of(GO:0099578),occurs_in(GO:0098978),occurs_in(EMAPA:17544)
• MGI MGI:95305 Eif4e enables GO:0045182 MGI:MGI:5473729|PMID:23263185 IEP F eukaryotic translation initiation factor 4E eIF-4E|If4e protein_coding_gene taxon:10090 20220928 SynGO part_of(GO:0099578),occurs_in(GO:0098978),occurs_in(EMAPA:17549)
• MGI MGI:95305 Eif4e enables GO:0045182 MGI:MGI:5473729|PMID:23263185 IEP F eukaryotic translation initiation factor 4E eIF-4E|If4e protein_coding_gene taxon:10090 20220928 SynGO part_of(GO:0099578),occurs_in(GO:0098978),occurs_in(EMAPA:35405)
• FB FBgn0000346 comt is_active_in GO:0099523 FB:FBrf0229008|PMID:25953899 IEP C comatose CG 1618|CG1618|Comatose|Comt|DmNSF|N-Ethylmaleimide-sensitive Factor|N-ethyl-maleimide sensitive fusion protein|N-ethylmaleimide-sensitive factor 1|N-ethylmaleimide-sensitive fusion protein|NEM-sensitive fusion protein|NSF|NSF 1|NSF-1|NSF1|Nsf|Nsf1|com|dNSF|dNSF-1|dNSF1|dNsf1|dnsf1 protein taxon:7227 20220928 SynGO
• FB FBgn0000346 comt is_active_in GO:0031594 FB:FBrf0229008|PMID:25953899 IEP C comatose CG 1618|CG1618|Comatose|Comt|DmNSF|N-Ethylmaleimide-sensitive Factor|N-ethyl-maleimide sensitive fusion protein|N-ethylmaleimide-sensitive factor 1|N-ethylmaleimide-sensitive fusion protein|NEM-sensitive fusion protein|NSF|NSF 1|NSF-1|NSF1|Nsf|Nsf1|com|dNSF|dNSF-1|dNSF1|dNsf1|dnsf1 protein taxon:7227 20220928 SynGO
• UniProtKB O75052 NOS1AP is_active_in GO:0098978 PMID:26869880 IEP C Carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein NOS1AP|CAPON|KIAA0464 protein taxon:9606 20220928 SynGO part_of(UBERON:0002421)
• UniProtKB O75962 TRIO is_active_in GO:0048786 PMID:27907191 IEP C Triple functional domain protein TRIO protein taxon:9606 20220928 SynGO part_of(UBERON:0002421)
• UniProtKB P02649 APOE is_active_in GO:0043083 PMID:22637583 IEP C Apolipoprotein E APOE protein taxon:9606 20220928 SynGO part_of(GO:0098978),part_of(UBERON:0000956)
• UniProtKB P02649 APOE is_active_in GO:0098978 PMID:22637583 IEP C Apolipoprotein E APOE protein taxon:9606 20220928 SynGO part_of(UBERON:0000956)
• UniProtKB P42858 HTT is_active_in GO:0099523 PMID:7748555 IEP C Huntingtin HTT|HD|IT15 protein taxon:9606 20220928 SynGO part_of(UBERON:0000956)
• UniProtKB Q13526 PIN1 is_active_in GO:0098978 PMID:28458925 IEP C Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 PIN1 protein taxon:9606 20220928 SynGO part_of(UBERON:0000956)
• UniProtKB Q13526 PIN1 is_active_in GO:0099524 PMID:28458925 IEP C Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 PIN1 protein taxon:9606 20220928 SynGO part_of(GO:0098978),part_of(UBERON:0000956)
• UniProtKB Q8N6T3 ARFGAP1 is_active_in GO:0045202 PMID:22423108 IEP C ADP-ribosylation factor GTPase-activating protein 1 ARFGAP1|ARF1GAP protein taxon:9606 20220928 SynGO part_of(UBERON:0000955)
• UniProtKB Q9ULW5 RAB26 is_active_in GO:0030672 PMID:25643395 IEP C Ras-related protein Rab-26 RAB26 protein taxon:9606 20220928 SynGO part_of(UBERON:0002421)
• UniProtKB P10096 GAPDH is_active_in GO:0098850 PMID:12488440 IEP C Glyceraldehyde-3-phosphate dehydrogenase GAPDH|GAPD protein taxon:9913 20220928 SynGO part_of(UBERON:0001869)
• UniProtKB P51790 CLCN3 is_active_in GO:0030672 PMID:11182090 IEP C H(+)/Cl(-) exchange transporter 3 CLCN3 protein taxon:9606 20220928 SynGO part_of(GO:0098978),part_of(UBERON:0000955) UniProtKB:P51790-1
• UniProtKB P51790 CLCN3 is_active_in GO:0030672 PMID:11182090 IEP C H(+)/Cl(-) exchange transporter 3 CLCN3 protein taxon:9606 20220928 SynGO part_of(GO:0098982),part_of(UBERON:0000955) UniProtKB:P51790-1
• UniProtKB P51790 CLCN3 is_active_in GO:0030672 PMID:11182090 IEP C H(+)/Cl(-) exchange transporter 3 CLCN3 protein taxon:9606 20220928 SynGO part_of(UBERON:0002421) UniProtKB:P51790-1
• UniProtKB P51790 CLCN3 is_active_in GO:0098978 PMID:11182090 IEP C H(+)/Cl(-) exchange transporter 3 CLCN3 protein taxon:9606 20220928 SynGO part_of(UBERON:0000955) UniProtKB:P51790-1
• UniProtKB P51790 CLCN3 is_active_in GO:0098982 PMID:11182090 IEP C H(+)/Cl(-) exchange transporter 3 CLCN3 protein taxon:9606 20220928 SynGO part_of(UBERON:0000955) UniProtKB:P51790-1

gorule-0000013

GORULE:0000013: Taxon-appropriate annotation check

• total: 2

messages

• UniProtKB O73706 CACNA1B is_active_in GO:0044305 PMID:7993621 EXP C Voltage-dependent N-type calcium channel subunit alpha-1B CACNA1B protein taxon:9031 20220928 SynGO
• UniProtKB O73706 CACNA1B is_active_in GO:0044305 PMID:7993621 IDA C Voltage-dependent N-type calcium channel subunit alpha-1B CACNA1B protein taxon:9031 20220928 SynGO