GORULE violations assigned by CAFA

Contents

gorule-0000008 GORULE:0000008: No annotations should be made to uninformatively high level terms

gorule-0000020 Violates GORULE:0000020

gorule-0000046 GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms

gorule-0000061 GORULE:0000061: Found violatoin of: `Only certain gene product to term relations are allowed for a given GO term` and could not be repaired: RO:0002325 should be one of BFO:0000050

MESSAGES

gorule-0000008

GORULE:0000008: No annotations should be made to uninformatively high level terms

• total: 120

messages

• MGI MGI:88256 Camk2a involved_in GO:0018105 MGI:MGI:5882895|PMID:15994560 IDA P calcium/calmodulin-dependent protein kinase II alpha alpha-CaMKII protein_coding_gene taxon:10090 20160919 CAFA
• MGI MGI:97592 Prkaca involved_in GO:0018105 MGI:MGI:5882918|PMID:9688563 IMP P protein kinase, cAMP dependent, catalytic, alpha C alpha|Cs|PKA|Pkaca protein_coding_gene taxon:10090 20160915 CAFA
• MGI MGI:97592 Prkaca involved_in GO:0018105 MGI:MGI:5882920|PMID:9413984 IDA P protein kinase, cAMP dependent, catalytic, alpha C alpha|Cs|PKA|Pkaca protein_coding_gene taxon:10090 20160921 CAFA
• MGI MGI:97595 Prkca involved_in GO:0010360 MGI:MGI:5882922|PMID:7828597 IMP P protein kinase C, alpha Pkca protein_coding_gene taxon:10090 20170123 CAFA
• MGI MGI:97798 Ptgs2 involved_in GO:0043154 MGI:MGI:5474549|PMID:21716255 IMP P prostaglandin-endoperoxide synthase 2 Cox-2|COX2|cyclooxygenase 2|cyclooxygenase-2|Pghs2|PGHS-2|PHS-2|prostaglandin G/H synthase|Tis10 protein_coding_gene taxon:10090 20161108 CAFA
• MGI MGI:1350917 Rps3 involved_in GO:0051092 MGI:MGI:5882887|PMID:18045535 IMP P ribosomal protein S3 D7Ertd795e protein_coding_gene taxon:10090 20160512 CAFA has_input(GO:0035525)
• MGI MGI:1913771 Rwdd1 involved_in GO:2000825 MGI:MGI:5882884|PMID:18761815 IMP P RWD domain containing 1 2610002D06Rik|2700069A07Rik protein_coding_gene taxon:10090 20161115 CAFA
• UniProtKB P00634 phoA involved_in GO:0006470 PMID:8634266 IDA P Alkaline phosphatase phoA|JW0374|b0383 protein taxon:83333 20160926 CAFA
• UniProtKB P02942 tsr involved_in GO:0032110 PMID:18931127 IMP P Methyl-accepting chemotaxis protein I tsr|cheD|JW4318|b4355 protein taxon:83333 20161017 CAFA
• UniProtKB P07330 cheB involved_in GO:0006482 PMID:15916610 IDA P Protein-glutamate methylesterase/protein-glutamine glutaminase cheB|JW1872|b1883 protein taxon:83333 20161017 CAFA
• UniProtKB P07330 cheB involved_in GO:0018277 PMID:15916610 IDA P Protein-glutamate methylesterase/protein-glutamine glutaminase cheB|JW1872|b1883 protein taxon:83333 20161017 CAFA
• UniProtKB P07364 cheR involved_in GO:0006479 PMID:15916610 IDA P Chemotaxis protein methyltransferase cheR|cheX|JW1873|b1884 protein taxon:83333 20161017 CAFA
• UniProtKB P0AFZ3 sspB involved_in GO:0032781 PMID:14536075 IMP P Stringent starvation protein B sspB|JW3197|b3228 protein taxon:83333 20160930 CAFA
• UniProtKB P21513 rne involved_in GO:1902280 PMID:15236960 IMP P Ribonuclease E rne|ams|hmp1|JW1071|b1084 protein taxon:83333 20161004 CAFA
• UniProtKB P32099 lplA involved_in GO:0009249 PMID:16384580 IDA P Lipoate-protein ligase A lplA|yjjF|JW4349|b4386 protein taxon:83333 20160926 CAFA
• UniProtKB O00273 DFFA involved_in GO:0032076 PMID:19944011 IMP P DNA fragmentation factor subunit alpha DFFA|DFF1|DFF45|H13 protein taxon:9606 20161021 CAFA
• UniProtKB O00469 PLOD2 involved_in GO:0017185 PMID:10934207 IDA P Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 PLOD2 protein taxon:9606 20160603 CAFA
• UniProtKB O00469 PLOD2 involved_in GO:0017185 PMID:9582318 ISS UniProtKB:O60568 P Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 PLOD2 protein taxon:9606 20160603 CAFA
• UniProtKB O43464 HTRA2 involved_in GO:0043280 PMID:11967569 IMP P Serine protease HTRA2, mitochondrial HTRA2|OMI|PRSS25 protein taxon:9606 20161215 CAFA
• UniProtKB O60568 PLOD3 involved_in GO:0017185 PMID:10934207 IMP P Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 PLOD3 protein taxon:9606 20160603 CAFA
• UniProtKB O60568 PLOD3 involved_in GO:0017185 PMID:9582318 IDA P Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 PLOD3 protein taxon:9606 20160603 CAFA
• UniProtKB O60568 PLOD3 involved_in GO:0017185 PMID:9724729 IDA P Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 PLOD3 protein taxon:9606 20160603 CAFA
• UniProtKB O75496 GMNN involved_in GO:0035563 PMID:11125146 IDA P Geminin GMNN protein taxon:9606 20160725 CAFA has_input(UniProtKB:Q91628)
• UniProtKB P01270 PTH involved_in GO:0007202 PMID:11604398 IMP P Parathyroid hormone PTH protein taxon:9606 20170111 CAFA
• UniProtKB P01579 IFNG involved_in GO:0071902 PMID:22504299 IDA P Interferon gamma IFNG protein taxon:9606 20170124 CAFA
• UniProtKB P01579 IFNG involved_in GO:1904798 PMID:23629966 IDA P Interferon gamma IFNG protein taxon:9606 20161108 CAFA
• UniProtKB P01730 CD4 involved_in GO:0033674 PMID:24942581 IDA P T-cell surface glycoprotein CD4 CD4 protein taxon:9606 20161130 CAFA
• UniProtKB P01911 HLA-DRB1 involved_in GO:0033674 PMID:24942581 IDA P HLA class II histocompatibility antigen, DRB1 beta chain HLA-DRB1 protein taxon:9606 20191219 CAFA
• UniProtKB P02686 MBP involved_in GO:1904685 PMID:22524708 IDA P Myelin basic protein MBP protein taxon:9606 20190910 CAFA occurs_in(CL:0002618),has_input(UniProtKB:P08253)
• UniProtKB P02788 LTF involved_in GO:2000117 PMID:12788072 IDA P Lactotransferrin LTF|GIG12|LF protein taxon:9606 20161206 CAFA
• UniProtKB P04233 CD74 involved_in GO:0033674 PMID:24942581 IDA P HLA class II histocompatibility antigen gamma chain CD74|DHLAG protein taxon:9606 20161130 CAFA
• UniProtKB P04264 KRT1 involved_in GO:0018149 PMID:7543090 IDA P Keratin, type II cytoskeletal 1 KRT1|KRTA protein taxon:9606 20161020 CAFA
• UniProtKB P05814 CSN2 involved_in GO:2000117 PMID:12788072 IDA P Beta-casein CSN2|CASB protein taxon:9606 20161206 CAFA
• UniProtKB P06239 LCK involved_in GO:0018108 PMID:8681956 IMP P Tyrosine-protein kinase Lck LCK protein taxon:9606 20161125 CAFA has_input(UniProtKB:P20963)
• UniProtKB P06493 CDK1 involved_in GO:0006468 PMID:24746669 IMP P Cyclin-dependent kinase 1 CDK1|CDC2|CDC28A|CDKN1|P34CDC2 protein taxon:9606 20161207 CAFA
• UniProtKB P07602 PSAP involved_in GO:1903771 PMID:1454804 IDA P Prosaposin PSAP|GLBA|SAP1 protein taxon:9606 20210204 CAFA
• UniProtKB P08183 ABCB1 involved_in GO:1901529 PMID:7828597 IMP P ATP-dependent translocase ABCB1 ABCB1|MDR1|PGY1 protein taxon:9606 20170123 CAFA
• UniProtKB P08581 MET involved_in GO:1905098 PMID:25198505 IDA P Hepatocyte growth factor receptor MET protein taxon:9606 20161024 CAFA has_input(UniProtKB:Q92974)
• UniProtKB P11387 TOP1 involved_in GO:0018105 PMID:9611241 IMP P DNA topoisomerase 1 TOP1 protein taxon:9606 20161128 CAFA
• UniProtKB P12931 SRC involved_in GO:0018108 PMID:20624904 IMP P Proto-oncogene tyrosine-protein kinase Src SRC|SRC1 protein taxon:9606 20161201 CAFA
• UniProtKB P12931 SRC involved_in GO:0018108 PMID:25425738 IMP P Proto-oncogene tyrosine-protein kinase Src SRC|SRC1 protein taxon:9606 20161208 CAFA
• UniProtKB P12956 XRCC6 involved_in GO:0045860 PMID:22504299 IDA P X-ray repair cross-complementing protein 6 XRCC6|G22P1 protein taxon:9606 20170124 CAFA
• UniProtKB P13010 XRCC5 involved_in GO:0045860 PMID:22504299 IDA P X-ray repair cross-complementing protein 5 XRCC5|G22P2 protein taxon:9606 20170124 CAFA
• UniProtKB P13645 KRT10 involved_in GO:0018149 PMID:7543090 IDA P Keratin, type I cytoskeletal 10 KRT10|KPP protein taxon:9606 20161020 CAFA
• UniProtKB P14598 NCF1 involved_in GO:0045741 PMID:26514923 IMP P Neutrophil cytosol factor 1 NCF1|NOXO2|SH3PXD1A protein taxon:9606 20161214 CAFA
• UniProtKB P16949 STMN1 involved_in GO:1905098 PMID:25198505 IMP P Stathmin STMN1|C1orf215|LAP18|OP18 protein taxon:9606 20161024 CAFA has_input(UniProtKB:Q92974)
• UniProtKB P17612 PRKACA involved_in GO:0018105 PMID:11029056 IDA P cAMP-dependent protein kinase catalytic subunit alpha PRKACA|PKACA protein taxon:9606 20160919 CAFA
• UniProtKB P19957 PI3 involved_in GO:0018149 PMID:7543090 IDA P Elafin PI3|WAP3|WFDC14 protein taxon:9606 20161020 CAFA
• UniProtKB P20810 CAST involved_in GO:0097340 PMID:2407243 IMP P Calpastatin CAST protein taxon:9606 20160921 CAFA
• UniProtKB P20930 FLG involved_in GO:0018149 PMID:7543090 IDA P Filaggrin FLG protein taxon:9606 20161020 CAFA
• UniProtKB P22531 SPRR2E involved_in GO:0018149 PMID:7543090 IDA P Small proline-rich protein 2E SPRR2E protein taxon:9606 20161020 CAFA
• UniProtKB P22531 SPRR2E involved_in GO:0018149 PMID:9722562 IDA P Small proline-rich protein 2E SPRR2E protein taxon:9606 20161020 CAFA
• UniProtKB P22735 TGM1 involved_in GO:0018149 PMID:9722562 IDA P Protein-glutamine gamma-glutamyltransferase K TGM1|KTG protein taxon:9606 20161020 CAFA
• UniProtKB P23284 PPIB involved_in GO:0000413 GO_REF:0000024 ISS UniProtKB:P24367 P Peptidyl-prolyl cis-trans isomerase B PPIB|CYPB protein taxon:9606 20131127 CAFA
• UniProtKB P23381 WARS1 involved_in GO:0006469 PMID:22504299 IDA P Tryptophan--tRNA ligase, cytoplasmic WARS1|IFI53|WARS|WRS protein taxon:9606 20170124 CAFA
• UniProtKB P23396 RPS3 involved_in GO:0051092 PMID:18045535 IGI UniProtKB:Q04206 P Small ribosomal subunit protein uS3 RPS3|OK/SW-cl.26 protein taxon:9606 20160512 CAFA
• UniProtKB P23396 RPS3 involved_in GO:0051092 PMID:18045535 IMP P Small ribosomal subunit protein uS3 RPS3|OK/SW-cl.26 protein taxon:9606 20160427 CAFA has_input(UniProtKB:Q04206)
• UniProtKB P25445 FAS involved_in GO:2001269 PMID:11096076 IMP P Tumor necrosis factor receptor superfamily member 6 FAS|APT1|FAS1|TNFRSF6 protein taxon:9606 20170124 CAFA
• UniProtKB P29375 KDM5A involved_in GO:0051090 PMID:18270511 IMP P Lysine-specific demethylase 5A KDM5A|JARID1A|RBBP2|RBP2 protein taxon:9606 20161109 CAFA has_input(UniProtKB:P25440)
• UniProtKB P35321 SPRR1A involved_in GO:0018149 PMID:7543090 IDA P Cornifin-A SPRR1A protein taxon:9606 20161020 CAFA
• UniProtKB P35638 DDIT3 involved_in GO:0043433 PMID:18534616 IMP P DNA damage-inducible transcript 3 protein DDIT3|CHOP|CHOP10|GADD153 protein taxon:9606 20170113 CAFA has_input(UniProtKB:P35222)
• UniProtKB P35638 DDIT3 involved_in GO:0051091 PMID:18534616 IMP P DNA damage-inducible transcript 3 protein DDIT3|CHOP|CHOP10|GADD153 protein taxon:9606 20170113 CAFA has_input(UniProtKB:P05412)
• UniProtKB P35638 DDIT3 involved_in GO:0051091 PMID:18534616 IMP P DNA damage-inducible transcript 3 protein DDIT3|CHOP|CHOP10|GADD153 protein taxon:9606 20170113 CAFA has_input(UniProtKB:P14410)
• UniProtKB P35908 KRT2 involved_in GO:0018149 PMID:7543090 IDA P Keratin, type II cytoskeletal 2 epidermal KRT2|KRT2A|KRT2E protein taxon:9606 20161020 CAFA
• UniProtKB P37231 PPARG involved_in GO:0043388 PMID:19043829 IMP UniProtKB:P19793 P Peroxisome proliferator-activated receptor gamma PPARG|NR1C3 protein taxon:9606 20161104 CAFA
• UniProtKB P38936 CDKN1A involved_in GO:1904030 PMID:8876165 IMP P Cyclin-dependent kinase inhibitor 1 CDKN1A|CAP20|CDKN1|CIP1|MDA6|PIC1|SDI1|WAF1 protein taxon:9606 20160818 CAFA
• UniProtKB P45983 MAPK8 involved_in GO:0006468 PMID:21856198 IDA P Mitogen-activated protein kinase 8 MAPK8|JNK1|PRKM8|SAPK1|SAPK1C protein taxon:9606 20160728 CAFA happens_during(GO:0072708),has_input(UniProtKB:Q9H211)
• UniProtKB P45983 MAPK8 involved_in GO:1902595 PMID:21856198 IMP P Mitogen-activated protein kinase 8 MAPK8|JNK1|PRKM8|SAPK1|SAPK1C protein taxon:9606 20160728 CAFA has_input(UniProtKB:O95251),happens_during(GO:0072708)|has_input(UniProtKB:O95251),happens_during(GO:0072720)|has_input(UniProtKB:O95251),happens_during(GO:0072739)
• UniProtKB P45984 MAPK9 involved_in GO:0018105 PMID:21856198 IDA P Mitogen-activated protein kinase 9 MAPK9|JNK2|PRKM9|SAPK1A protein taxon:9606 20160728 CAFA happens_during(GO:0072708),has_input(UniProtKB:Q9H211)
• UniProtKB P46108 CRK involved_in GO:0043393 PMID:17515907 IMP P Adapter molecule crk CRK protein taxon:9606 20161012 CAFA
• UniProtKB P46527 CDKN1B involved_in GO:1904030 PMID:8684460 IMP P Cyclin-dependent kinase inhibitor 1B CDKN1B|KIP1|p27 protein taxon:9606 20160817 CAFA
• UniProtKB P46777 RPL5 involved_in GO:1904667 PMID:18560357 IDA P Large ribosomal subunit protein uL18 RPL5|MSTP030 protein taxon:9606 20170124 CAFA
• UniProtKB P47897 QARS1 involved_in GO:0006469 PMID:11096076 IDA P Glutamine--tRNA ligase QARS1|QARS protein taxon:9606 20170124 CAFA
• UniProtKB P49768 PSEN1 involved_in GO:1904797 PMID:10508860 IMP P Presenilin-1 PSEN1|AD3|PS1|PSNL1 protein taxon:9606 20170124 CAFA
• UniProtKB P49918 CDKN1C involved_in GO:1904030 PMID:11746698 IMP P Cyclin-dependent kinase inhibitor 1C CDKN1C|KIP2 protein taxon:9606 20160816 CAFA
• UniProtKB P53350 PLK1 involved_in GO:0006468 PMID:17461553 IMP P Serine/threonine-protein kinase PLK1 PLK1|PLK protein taxon:9606 20170112 CAFA
• UniProtKB P55854 SUMO3 involved_in GO:0043392 PMID:16626738 IDA P Small ubiquitin-related modifier 3 SUMO3|SMT3A|SMT3H1 protein taxon:9606 20190910 CAFA has_input(UniProtKB:Q13569)
• UniProtKB P62081 RPS7 involved_in GO:1904667 PMID:17310983 IDA P Small ribosomal subunit protein eS7 RPS7 protein taxon:9606 20170125 CAFA
• UniProtKB P62328 TMSB4X involved_in GO:0007253 PMID:21343177 IMP P Thymosin beta-4 TMSB4X|TB4X|THYB4|TMSB4 protein taxon:9606 20180925 CAFA occurs_in(CL:0000575),happens_during(GO:0033209)
• UniProtKB P62328 TMSB4X involved_in GO:0032088 PMID:21343177 IMP P Thymosin beta-4 TMSB4X|TB4X|THYB4|TMSB4 protein taxon:9606 20180925 CAFA occurs_in(CL:0000575),happens_during(GO:0033209)
• UniProtKB P62328 TMSB4X involved_in GO:1903026 PMID:21343177 IDA P Thymosin beta-4 TMSB4X|TB4X|THYB4|TMSB4 protein taxon:9606 20180925 CAFA occurs_in(CL:0000575),has_input(UniProtKB:P10145),has_input(UniProtKB:Q04206),happens_during(GO:0033209)
• UniProtKB P62328 TMSB4X involved_in GO:1905273 PMID:21106936 IDA P Thymosin beta-4 TMSB4X|TB4X|THYB4|TMSB4 protein taxon:9606 20230531 CAFA occurs_in(CL:0002618),has_input(UniProtKB:P25705),regulates(GO:0043534)|occurs_in(CL:0002618),has_input(UniProtKB:P06576),regulates(GO:0043534)
• UniProtKB P62829 RPL23 involved_in GO:1904667 PMID:15314173 IDA P Large ribosomal subunit protein uL14 RPL23 protein taxon:9606 20170125 CAFA
• UniProtKB P62913 RPL11 involved_in GO:0032092 PMID:18560357 IMP P Large ribosomal subunit protein uL5 RPL11 protein taxon:9606 20170124 CAFA
• UniProtKB P62913 RPL11 involved_in GO:1904667 PMID:18560357 IMP P Large ribosomal subunit protein uL5 RPL11 protein taxon:9606 20170124 CAFA
• UniProtKB P63165 SUMO1 involved_in GO:0043392 PMID:16626738 IDA P Small ubiquitin-related modifier 1 SUMO1|SMT3C|SMT3H3|UBL1|OK/SW-cl.43 protein taxon:9606 20190910 CAFA has_input(UniProtKB:Q13569)
• UniProtKB P67870 CSNK2B involved_in GO:0018107 PMID:15723517 IDA P Casein kinase II subunit beta CSNK2B|CK2N|G5A protein taxon:9606 20161206 CAFA
• UniProtKB P68400 CSNK2A1 involved_in GO:0018107 PMID:15723517 IDA P Casein kinase II subunit alpha CSNK2A1|CK2A1 protein taxon:9606 20161206 CAFA
• UniProtKB P78527 PRKDC involved_in GO:0006468 PMID:22504299 IMP P DNA-dependent protein kinase catalytic subunit PRKDC|HYRC|HYRC1 protein taxon:9606 20170124 CAFA
• UniProtKB Q02809 PLOD1 involved_in GO:0017185 PMID:10934207 IDA P Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 PLOD1|LLH|PLOD protein taxon:9606 20160603 CAFA
• UniProtKB Q02809 PLOD1 involved_in GO:0017185 PMID:9582318 ISS UniProtKB:O60568 P Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 PLOD1|LLH|PLOD protein taxon:9606 20160603 CAFA
• UniProtKB Q02809 PLOD1 involved_in GO:0017185 PMID:9724729 IDA P Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 PLOD1|LLH|PLOD protein taxon:9606 20160603 CAFA
• UniProtKB Q04206 RELA involved_in GO:0051092 PMID:18045535 IGI UniProtKB:P23396 P Transcription factor p65 RELA|NFKB3 protein taxon:9606 20160512 CAFA
• UniProtKB Q04206 RELA involved_in GO:0051092 PMID:18045535 IMP P Transcription factor p65 RELA|NFKB3 protein taxon:9606 20160512 CAFA
• UniProtKB Q09161 NCBP1 involved_in GO:1905216 PMID:23793891 IMP P Nuclear cap-binding protein subunit 1 NCBP1|CBP80|NCBP protein taxon:9606 20170111 CAFA
• UniProtKB Q13237 PRKG2 involved_in GO:0006468 PMID:15905169 IMP P cGMP-dependent protein kinase 2 PRKG2|PRKGR2 protein taxon:9606 20161107 CAFA has_input(UniProtKB:P35521)
• UniProtKB Q13547 HDAC1 involved_in GO:0006476 PMID:23629966 IDA P Histone deacetylase 1 HDAC1|RPD3L1 protein taxon:9606 20161108 CAFA
• UniProtKB Q13976 PRKG1 NOT|involved_in GO:0006468 PMID:15905169 IDA P cGMP-dependent protein kinase 1 PRKG1|PRKG1B|PRKGR1A|PRKGR1B protein taxon:9606 20161107 CAFA
• UniProtKB Q14061 COX17 involved_in GO:1904960 PMID:19393246 IMP P Cytochrome c oxidase copper chaperone COX17 protein taxon:9606 20170117 CAFA
• UniProtKB Q14722 KCNAB1 involved_in GO:1903817 PMID:10585425 IMP P Voltage-gated potassium channel subunit beta-1 KCNAB1|KCNA1B protein taxon:9606 20161129 CAFA
• UniProtKB Q99683 MAP3K5 involved_in GO:0006468 PMID:11096076 IDA P Mitogen-activated protein kinase kinase kinase 5 MAP3K5|ASK1|MAPKKK5|MEKK5 protein taxon:9606 20170124 CAFA
• UniProtKB Q9H211 CDT1 involved_in GO:0035563 PMID:11125146 IDA P DNA replication factor Cdt1 CDT1 protein taxon:9606 20160725 CAFA has_input(UniProtKB:P30664),has_input(UniProtKB:Q5XK83),has_input(UniProtKB:Q91628)
• UniProtKB Q9H211 CDT1 involved_in GO:1902595 PMID:21856198 IDA P DNA replication factor Cdt1 CDT1 protein taxon:9606 20160728 CAFA happens_during(GO:0072708),has_input(UniProtKB:O95251)
• UniProtKB Q9H227 GBA3 involved_in GO:1903017 PMID:26193330 IDA P Cytosolic beta-glucosidase GBA3|CBG|CBGL1 protein taxon:9606 20161209 CAFA
• UniProtKB Q9NR00 TCIM involved_in GO:1900020 PMID:15087392 IDA P Transcriptional and immune response regulator TCIM|C8orf4|TC1 protein taxon:9606 20170110 CAFA
• UniProtKB Q9NZH0 GPRC5B involved_in GO:0061098 GO_REF:0000024 ISS UniProtKB:Q923Z0 P G-protein coupled receptor family C group 5 member B GPRC5B|RAIG2 protein taxon:9606 20131209 CAFA
• UniProtKB Q9P2J5 LARS1 involved_in GO:0043547 PMID:22424946 IMP P Leucine--tRNA ligase, cytoplasmic LARS1|KIAA1352|LARS protein taxon:9606 20170123 CAFA
• UniProtKB Q9UD71 PPP1R1B involved_in GO:0032515 PMID:10807923 IDA P Protein phosphatase 1 regulatory subunit 1B PPP1R1B|DARPP32 protein taxon:9606 20161003 CAFA
• WB WBGene00002191 kin-3 involved_in GO:0018105 WB_REF:WBPaper00051123|PMID:1304892 IDA P B0205.7|casein kinase II|CKIIalpha gene taxon:6239 20160919 CAFA
• UniProtKB P00517 PRKACA involved_in GO:0018105 PMID:2040607 IMP P cAMP-dependent protein kinase catalytic subunit alpha PRKACA protein taxon:9913 20160826 CAFA
• UniProtKB P00974 P00974 involved_in GO:1900004 PMID:4338 IDA P Pancreatic trypsin inhibitor protein taxon:9913 20161025 CAFA
• UniProtKB P02666 CSN2 involved_in GO:2000117 PMID:12788072 IDA P Beta-casein CSN2 protein taxon:9913 20161206 CAFA
• UniProtKB P21146 GRK2 involved_in GO:0006468 PMID:11566136 IDA P Beta-adrenergic receptor kinase 1 GRK2|ADRBK1 protein taxon:9913 20161024 CAFA
• UniProtKB P24627 LTF involved_in GO:2000117 PMID:12788072 IDA P Lactotransferrin LTF protein taxon:9913 20161206 CAFA
• UniProtKB P80311 PPIB involved_in GO:0000413 GO_REF:0000024 ISS UniProtKB:P24367 P Peptidyl-prolyl cis-trans isomerase B PPIB protein taxon:9913 20131127 CAFA
• UniProtKB Q58DA8 ZDHHC9 involved_in GO:0018230 GO_REF:0000024 ISS UniProtKB:Q9Y397 P Palmitoyltransferase ZDHHC9 ZDHHC9 protein taxon:9913 20131211 CAFA
• UniProtKB Q5EA55 GOLGA7 involved_in GO:0018230 GO_REF:0000024 ISS UniProtKB:Q7Z5G4 P Golgin subfamily A member 7 GOLGA7 protein taxon:9913 20131211 CAFA
• UniProtKB Q8N726 CDKN2A involved_in GO:1904667 PMID:18560357 IDA P Tumor suppressor ARF CDKN2A|CDKN2|MLM protein taxon:9606 20170124 CAFA UniProtKB:Q8N726
• UniProtKB Q5ZLC9 GOLGA7 involved_in GO:0018230 GO_REF:0000024 ISS UniProtKB:Q7Z5G4 P Golgin subfamily A member 7 GOLGA7|RCJMB04_6k22 protein taxon:9031 20131211 CAFA
• UniProtKB Q9XT82 PTGER2 involved_in GO:0043154 PMID:21716255 IMP P Prostaglandin E2 receptor EP2 subtype PTGER2 protein taxon:9615 20161108 CAFA

gorule-0000020

Violates GORULE:0000020

• total: 3

messages

• ComplexPortal CPX-2006 cyclina2-cdk2_human involved_in GO:0016572 PMID:11746698 IDA P Cyclin A2-CDK2 complex CCNA2:CDK2 protein_complex taxon:9606 20160816 CAFA
• ComplexPortal CPX-2006 cyclina2-cdk2_human involved_in GO:0016572 PMID:8684460 IDA P Cyclin A2-CDK2 complex CCNA2:CDK2 protein_complex taxon:9606 20160817 CAFA
• ComplexPortal CPX-2006 cyclina2-cdk2_human involved_in GO:0016572 PMID:8876165 IDA P Cyclin A2-CDK2 complex CCNA2:CDK2 protein_complex taxon:9606 20160818 CAFA

gorule-0000046

GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms

• total: 61

messages

• MGI MGI:88005 Amelx enables GO:0042803 MGI:MGI:5882882|PMID:19086270 IDA F amelogenin, X-linked Amel|Amg|M100888|Rgsc888 protein_coding_gene taxon:10090 20161125 CAFA
• MGI MGI:98181 Rrm2 enables GO:0042803 MGI:MGI:5882921|PMID:8876648 IDA F ribonucleotide reductase M2 R2 protein_coding_gene taxon:10090 20161103 CAFA
• MGI MGI:1915928 Smtnl1 enables GO:0043621 MGI:MGI:5882874|PMID:22424482 IDA F smoothelin-like 1 1110030K22Rik|Chasm protein_coding_gene taxon:10090 20161014 CAFA
• UniProtKB P05704 trg enables GO:0042803 PMID:15916610 IMP F Methyl-accepting chemotaxis protein III trg|JW1417|b1421 protein taxon:83333 20161017 CAFA
• UniProtKB P06709 birA enables GO:0042803 PMID:11124029 IMP F Bifunctional ligase/repressor BirA birA|bioR|dhbB|JW3941|b3973 protein taxon:83333 20161020 CAFA
• UniProtKB P07017 tar enables GO:0042803 PMID:15916610 IMP F Methyl-accepting chemotaxis protein II tar|cheM|JW1875|b1886 protein taxon:83333 20161017 CAFA
• UniProtKB P09372 grpE enables GO:0042803 PMID:9103205 IDA F Protein GrpE grpE|JW2594|b2614 protein taxon:83333 20160926 CAFA
• UniProtKB P0A6R3 fis enables GO:0042803 PMID:11183780 IMP F DNA-binding protein Fis fis|JW3229|b3261 protein taxon:83333 20161028 CAFA
• UniProtKB P0A6R3 fis enables GO:0042803 PMID:1619650 IDA F DNA-binding protein Fis fis|JW3229|b3261 protein taxon:83333 20161028 CAFA
• UniProtKB P0A6R3 fis enables GO:0042803 PMID:1946369 IMP F DNA-binding protein Fis fis|JW3229|b3261 protein taxon:83333 20161028 CAFA
• UniProtKB P0A6R3 fis enables GO:0042803 PMID:9362499 IMP F DNA-binding protein Fis fis|JW3229|b3261 protein taxon:83333 20161028 CAFA
• UniProtKB P0A7K2 rplL enables GO:0042803 PMID:10747797 IDA F Large ribosomal subunit protein bL12 rplL|JW3949|b3986 protein taxon:83333 20160630 CAFA
• UniProtKB P0AE70 mazF enables GO:0042803 PMID:12718874 IDA F Endoribonuclease toxin MazF mazF|chpA|chpAK|JW2753|b2782 protein taxon:83333 20161017 CAFA
• UniProtKB P0AE72 mazE enables GO:0042803 PMID:12718874 IDA F Antitoxin MazE mazE|chpAI|chpR|JW2754|b2783 protein taxon:83333 20161017 CAFA
• UniProtKB P0AE72 mazE enables GO:0042803 PMID:12743116 IDA F Antitoxin MazE mazE|chpAI|chpR|JW2754|b2783 protein taxon:83333 20161017 CAFA
• UniProtKB P0AE72 mazE enables GO:0042803 PMID:15735309 IDA F Antitoxin MazE mazE|chpAI|chpR|JW2754|b2783 protein taxon:83333 20161017 CAFA
• UniProtKB P0AFG8 aceE enables GO:0042803 PMID:11955070 IDA F Pyruvate dehydrogenase E1 component aceE|JW0110|b0114 protein taxon:83333 20161031 CAFA
• UniProtKB P0AFI7 pdxH enables GO:0042803 PMID:15858270 IDA F Pyridoxine/pyridoxamine 5'-phosphate oxidase pdxH|JW1630|b1638 protein taxon:83333 20160927 CAFA
• UniProtKB P0AFZ3 sspB enables GO:0042803 PMID:14536075 IMP F Stringent starvation protein B sspB|JW3197|b3228 protein taxon:83333 20160930 CAFA
• RGD 1359514 Scly enables GO:0042803 PMID:20164179|RGD:12793035 IDA F selenocysteine lyase gene taxon:10116 20161117 CAFA
• RGD 2553 Eno1 enables GO:0042803 PMID:7964722|RGD:12792993 IDA F enolase 1 gene taxon:10116 20160720 CAFA occurs_in(GO:0005886)
• RGD 2677 Gdnf enables GO:0042803 PMID:9187648|RGD:12793052 IDA F glial cell derived neurotrophic factor gene taxon:10116 20160913 CAFA
• RGD 2754 Gsta2 enables GO:0042803 PMID:15152091|RGD:12793030 IDA F glutathione S-transferase alpha 2 gene taxon:10116 20161020 CAFA
• RGD 3222 Ocm enables GO:0042803 PMID:2231727|RGD:12793042 IDA F oncomodulin gene taxon:10116 20161020 CAFA
• RGD 3222 Ocm enables GO:0042803 PMID:8487302|RGD:12793021 IDA F oncomodulin gene taxon:10116 20161020 CAFA
• RGD 3791 Svs4 enables GO:0043621 PMID:10583398|RGD:12793051 IDA F seminal vesicle secretory protein 4 gene taxon:10116 20161108 CAFA
• RGD 3791 Svs4 enables GO:0043621 PMID:14717694|RGD:12792991 IDA F seminal vesicle secretory protein 4 gene taxon:10116 20161108 CAFA
• FB FBgn0000024 Ace enables GO:0042803 FB:FBrf0128486|PMID:10892800 IDA F Acetylcholine esterase ACE|ACHE|AChE|AcChE|Acetylcholinesterase|AchE|CG17907|CHE|ChE|DmAChE|Dm_ace|ace|ace-2|acetyl choline esterase|acetylcholine esterase|acetylcholinesterase|ache|cholinesterase|dAChE|dmAChE|l(3)26|l(3)87Ed protein taxon:7227 20161019 CAFA
• FB FBgn0024432 Dlc90F enables GO:0042803 FB:FBrf0215103|PMID:19759397 IDA F Dynein light chain 90F CG12363|Dynein|TcTex-1|Tctex|Tctex-1|Tctex1|bs35g12.y1|dlc90F|dtctex-1|dynein light chain; tctex-1|l(3)04091|tctex|tctex-1 protein taxon:7227 20161115 CAFA
• FB FBgn0000546 EcR enables GO:0042803 FB:FBrf0218420|PMID:22628309 IMP F Ecdysone receptor CG1765|CG8347|DEcR|Dhr23|DmEcR|ECR|ECR-C|EcR-A|EcR-B|EcR-B1|EcR1b|EcRA|EcRB|EcRB-1|EcRB1|EcRC|EcdR|Ecdyson Receptor 1b|Ecdysone Receptor|Ecdysone-R|Ecr|Ecr1B|EcrB1|NR1H1|USP|Usp|anon-WO0229075.1|dECR|dmEcR|ecdysone receptor|ecdysone receptor complex|ecdysone-Receptor|ecdysteroid receptor|ecdysterone receptor|ecr|lie|long island expressway|male sterile(2)42A|ms(2)06410|ms(2)42A|snaggletooth|snt protein taxon:7227 20161115 CAFA
• FB FBgn0011760 ctp enables GO:0042803 FB:FBrf0187168|PMID:15581372 IMP F cut up 8kd dynein light chain|CG6998|Cdlc1|Ctp|Cut up|Cytoplasmic dynein|Cytoplasmic dynein 8kD light chain|Cytoplasmic dynein light chain 1|DLC8|DdlC1|Ddlc-1|Ddlc1|Dlc|Dynein light chain|Dynein light chain 1|LC8|anon-WO03040301.128|cytoplasmic dynein|cytoplasmic dynein light chain 1|dDYNLL1|ddlc1|dlc|dynein|dynein light chain|dynein light chain 1|dynein light chain 8|dynein light chain LC8|dynein light-chain|dynein light-chain 1|l(1)G0153|l(1)G0204|l(1)G0207|l(1)G0244|l(1)G0248|l(1)G0338|l(1)G0371|l(1)G0387|l(1)G0432|l(1)G0445|lincRNA.S8635 protein taxon:7227 20161115 CAFA
• FB FBgn0011760 ctp enables GO:0042803 FB:FBrf0215103|PMID:19759397 IDA F cut up 8kd dynein light chain|CG6998|Cdlc1|Ctp|Cut up|Cytoplasmic dynein|Cytoplasmic dynein 8kD light chain|Cytoplasmic dynein light chain 1|DLC8|DdlC1|Ddlc-1|Ddlc1|Dlc|Dynein light chain|Dynein light chain 1|LC8|anon-WO03040301.128|cytoplasmic dynein|cytoplasmic dynein light chain 1|dDYNLL1|ddlc1|dlc|dynein|dynein light chain|dynein light chain 1|dynein light chain 8|dynein light chain LC8|dynein light-chain|dynein light-chain 1|l(1)G0153|l(1)G0204|l(1)G0207|l(1)G0244|l(1)G0248|l(1)G0338|l(1)G0371|l(1)G0387|l(1)G0432|l(1)G0445|lincRNA.S8635 protein taxon:7227 20161115 CAFA
• FB FBgn0011760 ctp enables GO:0042803 FB:FBrf0254970|PMID:15051340 IMP F cut up 8kd dynein light chain|CG6998|Cdlc1|Ctp|Cut up|Cytoplasmic dynein|Cytoplasmic dynein 8kD light chain|Cytoplasmic dynein light chain 1|DLC8|DdlC1|Ddlc-1|Ddlc1|Dlc|Dynein light chain|Dynein light chain 1|LC8|anon-WO03040301.128|cytoplasmic dynein|cytoplasmic dynein light chain 1|dDYNLL1|ddlc1|dlc|dynein|dynein light chain|dynein light chain 1|dynein light chain 8|dynein light chain LC8|dynein light-chain|dynein light-chain 1|l(1)G0153|l(1)G0204|l(1)G0207|l(1)G0244|l(1)G0248|l(1)G0338|l(1)G0371|l(1)G0387|l(1)G0432|l(1)G0445|lincRNA.S8635 protein taxon:7227 20161115 CAFA
• UniProtKB P06733 ENO1 enables GO:0042803 PMID:3529090 IDA F Alpha-enolase ENO1|ENO1L1|MBPB1|MPB1 protein taxon:9606 20160718 CAFA
• UniProtKB P07602 PSAP enables GO:0042803 PMID:18462685 IDA F Prosaposin PSAP|GLBA|SAP1 protein taxon:9606 20161018 CAFA
• UniProtKB P08238 HSP90AB1 enables GO:0042803 PMID:10811660 IDA F Heat shock protein HSP 90-beta HSP90AB1|HSP90B|HSPC2|HSPCB protein taxon:9606 20170110 CAFA
• UniProtKB P10912 GHR enables GO:0042803 PMID:8943276 IDA F Growth hormone receptor GHR protein taxon:9606 20160817 CAFA
• UniProtKB P15309 ACP3 enables GO:0042803 PMID:10639192 IDA F Prostatic acid phosphatase ACP3|ACPP protein taxon:9606 20170112 CAFA
• UniProtKB P17342 NPR3 enables GO:0042803 PMID:16870210 IDA F Atrial natriuretic peptide receptor 3 NPR3|ANPRC|C5orf23|NPRC protein taxon:9606 20161014 CAFA
• UniProtKB P19971 TYMP enables GO:0042803 PMID:1590793 IDA F Thymidine phosphorylase TYMP|ECGF1 protein taxon:9606 20160722 CAFA
• UniProtKB P23381 WARS1 enables GO:0042803 PMID:22504299 IDA F Tryptophan--tRNA ligase, cytoplasmic WARS1|IFI53|WARS|WRS protein taxon:9606 20170124 CAFA
• UniProtKB P24522 GADD45A enables GO:0042803 PMID:20460379 IDA F Growth arrest and DNA damage-inducible protein GADD45 alpha GADD45A|DDIT1|GADD45 protein taxon:9606 20161124 CAFA
• UniProtKB P32455 GBP1 enables GO:0042803 PMID:10676968 IDA F Guanylate-binding protein 1 GBP1 protein taxon:9606 20161215 CAFA
• UniProtKB P35638 DDIT3 enables GO:0042803 PMID:18534616 IDA F DNA damage-inducible transcript 3 protein DDIT3|CHOP|CHOP10|GADD153 protein taxon:9606 20170113 CAFA
• UniProtKB P36888 FLT3 enables GO:0043621 PMID:14759363 IMP F Receptor-type tyrosine-protein kinase FLT3 FLT3|CD135|FLK2|STK1 protein taxon:9606 20161215 CAFA
• UniProtKB P37231 PPARG enables GO:0043621 PMID:19043829 IDA F Peroxisome proliferator-activated receptor gamma PPARG|NR1C3 protein taxon:9606 20161104 CAFA
• UniProtKB P46108 CRK enables GO:0043621 PMID:17515907 IDA F Adapter molecule crk CRK protein taxon:9606 20161011 CAFA
• UniProtKB P78356 PIP4K2B enables GO:0042803 PMID:9753329 IDA F Phosphatidylinositol 5-phosphate 4-kinase type-2 beta PIP4K2B|PIP5K2B protein taxon:9606 20160816 CAFA
• UniProtKB Q04206 RELA enables GO:0042803 PMID:18045535 IDA F Transcription factor p65 RELA|NFKB3 protein taxon:9606 20160512 CAFA
• UniProtKB Q13569 TDG enables GO:0043621 PMID:18512959 IDA F G/T mismatch-specific thymine DNA glycosylase TDG protein taxon:9606 20161103 CAFA
• UniProtKB Q6PI77 GPRASP3 enables GO:0042803 GO_REF:0000024 ISS UniProtKB:Q6PB60 F G protein-coupled receptor associated sorting protein 3 GPRASP3|BHLHB9|KIAA1701 protein taxon:9606 20131008 CAFA
• UniProtKB Q92886 NEUROG1 enables GO:0042803 PMID:20102160 IDA F Neurogenin-1 NEUROG1|BHLHA6|NEUROD3|NGN|NGN1 protein taxon:9606 20161208 CAFA
• UniProtKB Q9H2S9 IKZF4 involved_in GO:0051260 PMID:15491138 IMP P Zinc finger protein Eos IKZF4|KIAA1782|ZNFN1A4 protein taxon:9606 20170111 CAFA
• UniProtKB Q9NVS9 PNPO enables GO:0042803 PMID:12824491 IDA F Pyridoxine-5'-phosphate oxidase PNPO protein taxon:9606 20161020 CAFA
• UniProtKB Q9Y3M2 CBY1 enables GO:0042803 PMID:21182262 IDA F Protein chibby homolog 1 CBY1|ARB1|C22orf2|CBY|PGEA1|HRIHFB2025 protein taxon:9606 20161110 CAFA
• UniProtKB Q9Y3M2 CBY1 involved_in GO:0051289 PMID:21182262 IDA P Protein chibby homolog 1 CBY1|ARB1|C22orf2|CBY|PGEA1|HRIHFB2025 protein taxon:9606 20161110 CAFA
• UniProtKB Q9Y613 FHOD1 enables GO:0043621 PMID:16361249 IMP F FH1/FH2 domain-containing protein 1 FHOD1|FHOS|FHOS1 protein taxon:9606 20170113 CAFA
• UniProtKB P21758 MSR1 involved_in GO:0070207 PMID:11785981 IMP P Macrophage scavenger receptor types I and II MSR1 protein taxon:9913 20161011 CAFA
• UniProtKB P21793 DCN enables GO:0042803 PMID:15501918 IDA F Decorin DCN protein taxon:9913 20161104 CAFA
• UniProtKB P80457 XDH enables GO:0042803 PMID:11005854 IDA F Xanthine dehydrogenase/oxidase XDH protein taxon:9913 20161101 CAFA
• UniProtKB Q28181 CNGB1 enables GO:0042803 PMID:16280326 IDA F Cyclic nucleotide-gated cation channel beta-1 CNGB1|CNCG4 protein taxon:9913 20161101 CAFA

gorule-0000061

GORULE:0000061: Found violatoin of: `Only certain gene product to term relations are allowed for a given GO term` and could not be repaired: RO:0002325 should be one of BFO:0000050

• total: 3

messages

• MGI MGI:1197015 Daxx colocalizes_with GO:0000792 MGI:MGI:5882889|PMID:17081986 IDA C Fas death domain-associated protein protein_coding_gene taxon:10090 20161116 CAFA
• MGI MGI:104662 Pml colocalizes_with GO:0000792 MGI:MGI:5882889|PMID:17081986 IDA C promyelocytic leukemia 1200009E24Rik|Trim19 protein_coding_gene taxon:10090 20161116 CAFA
• FB FBgn0031835 Dpp10 colocalizes_with GO:0008076 FB:FBrf0250772|PMID:27198182 IPI UniProtKB:Q62897 C Dipeptidyl peptidase 10 CG11319|DPP10 protein taxon:7227 20171020 CAFA