GORULE violations assigned by HGNC

Contents

gorule-0000046 GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms

gorule-0000061 GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0001025 should be one of BFO:0000050

MESSAGES

gorule-0000046

GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms

• total: 3

messages

• RGD 1310999 Cadm1 enables GO:0042803 GO_REF:0000024|RGD:1600115 ISS UniProtKB:Q8R5M8 F cell adhesion molecule 1 gene taxon:10116 20070912 HGNC
• UniProtKB O02703 BAX enables GO:0042803 GO_REF:0000024 ISS UniProtKB:Q07812 F Apoptosis regulator BAX BAX protein taxon:9913 20090115 HGNC
• UniProtKB Q8HYU5 BAX enables GO:0042803 GO_REF:0000024 ISS UniProtKB:Q07812 F Bcl-2 Bcl-2 homology region 1-3 domain-containing protein BAX protein taxon:9615 20090115 HGNC

gorule-0000061

GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0001025 should be one of BFO:0000050

• total: 3

messages

• RGD 1560024 H1f7 located_in GO:0000785 GO_REF:0000024|RGD:1600115 ISS UniProtKB:Q8CJI4 C H1.7 linker histone gene taxon:10116 20090721 HGNC
• UniProtKB Q75WM6 H1-7 located_in GO:0000785 PMID:15710904 ISS UniProtKB:Q8CJI4 C Testis-specific H1 histone H1-7|H1FNT|HANP1 protein taxon:9606 20090721 HGNC
• UniProtKB Q8TEV9 SMCR8 located_in GO:0000785 PMID:28195531 IDA C Guanine nucleotide exchange protein SMCR8 SMCR8 protein taxon:9606 20170217 HGNC coincident_with(ENSEMBL:ENSG00000177169)