GORULE violations assigned by AgBase

Contents

gorule-0000002 GORULE:0000002: No 'NOT' annotations to 'protein binding ; GO:0005515'

gorule-0000008 GORULE:0000008: No annotations should be made to uninformatively high level terms

gorule-0000013 GORULE:0000013: Taxon-appropriate annotation check

gorule-0000020 Violates GORULE:0000020

gorule-0000046 GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms

gorule-0000061 GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0001025 should be one of BFO:0000050

MESSAGES

gorule-0000002

GORULE:0000002: No 'NOT' annotations to 'protein binding ; GO:0005515'

• total: 2

messages

• UniProtKB P63026 VAMP2 NOT|enables GO:0005515 PMID:20702699 IPI UniProtKB:F1N348 F Vesicle-associated membrane protein 2 VAMP2|SYB2 protein taxon:9913 20141106 AgBase
• UniProtKB P63026 VAMP2 NOT|enables GO:0005515 PMID:20702699 IPI UniProtKB:P20488 F Vesicle-associated membrane protein 2 VAMP2|SYB2 protein taxon:9913 20141106 AgBase

gorule-0000008

GORULE:0000008: No annotations should be made to uninformatively high level terms

• total: 49

messages

• UniProtKB D0G0B6 PLIN2 located_in GO:0005622 PMID:21420243 IDA C Perilipin PLIN2|ADFP protein taxon:9823 20150513 AgBase part_of(CL:0000187),part_of(UBERON:0001381) UniProtKB:D0G0B6
• UniProtKB F1RIT1 TRPV4 located_in GO:0005622 PMID:19790068 IDA C Ion transport domain-containing protein TRPV4 protein taxon:9823 20150803 AgBase part_of(CL:0000138) UniProtKB:F1RIT1
• MGI MGI:96157 Hmgb2 enables GO:0008134 MGI:MGI:5490149|PMID:23495099 IDA F high mobility group box 2 Hmg2|HMG-2 protein_coding_gene taxon:10090 20150512 AgBase
• MGI MGI:1197010 Sumo1 enables GO:0008134 MGI:MGI:5616325|PMID:15023536 IMP F small ubiquitin-like modifier 1 PIC1|SENTRIN|Smt3C|Ubl1 protein_coding_gene taxon:10090 20150116 AgBase
• UniProtKB A7WLH8 SUMO1 enables GO:0008134 GO_REF:0000024 ISS UniProtKB:P63166 F Small ubiquitin-related modifier 1 SUMO1 protein taxon:9823 20150116 AgBase
• UniProtKB F1RJ01 HMGB2 enables GO:0008134 GO_REF:0000024 ISS UniProtKB:P30681 F HMG box domain-containing protein HMGB2 protein taxon:9823 20150512 AgBase
• UniProtKB F1RJ01 HMGB2 enables GO:0008134 GO_REF:0000024 ISS UniProtKB:Q3U566 F HMG box domain-containing protein HMGB2 protein taxon:9823 20150512 AgBase
• UniProtKB I3L8Q3 CSF2 involved_in GO:0072651 PMID:16792532 IMP P Granulocyte-macrophage colony-stimulating factor CSF2 protein taxon:9823 20150530 AgBase occurs_in(CL:1000274)
• UniProtKB Q4PLW0 PLIN2 located_in GO:0005622 PMID:21420243 IDA C Perilipin-2 PLIN2|ADFP|ADRP protein taxon:9823 20150513 AgBase part_of(CL:0000187),part_of(UBERON:0001381)
• UniProtKB G2XKQ0 SUMO1P1 enables GO:0008134 GO_REF:0000024 ISS UniProtKB:P63166 F Small ubiquitin-related modifier 5 SUMO1P1|SUMO5|UBL2|UBL6 protein taxon:9606 20150116 AgBase
• UniProtKB P26583 HMGB2 enables GO:0008134 GO_REF:0000024 ISS UniProtKB:P30681 F High mobility group protein B2 HMGB2|HMG2 protein taxon:9606 20150512 AgBase
• UniProtKB P26583 HMGB2 enables GO:0008134 GO_REF:0000024 ISS UniProtKB:Q3U566 F High mobility group protein B2 HMGB2|HMG2 protein taxon:9606 20150512 AgBase
• UniProtKB P63165 SUMO1 enables GO:0008134 GO_REF:0000024 ISS UniProtKB:P63166 F Small ubiquitin-related modifier 1 SUMO1|SMT3C|SMT3H3|UBL1|OK/SW-cl.43 protein taxon:9606 20150116 AgBase
• UniProtKB F1MHQ4 FABP4 involved_in GO:0001816 GO_REF:0000024 ISS UniProtKB:P04117 P Cytosolic fatty-acid binding proteins domain-containing protein FABP4 protein taxon:9913 20160205 AgBase
• UniProtKB G3MZL6 G3MZL6 enables GO:0008134 GO_REF:0000024 ISS UniProtKB:P63166 F Rad60/SUMO-like domain-containing protein protein taxon:9913 20150116 AgBase
• UniProtKB P11052 CSF2 involved_in GO:0072651 GO_REF:0000024 ISS UniProtKB:Q29118 P Granulocyte-macrophage colony-stimulating factor CSF2 protein taxon:9913 20150530 AgBase
• UniProtKB P40673 HMGB2 enables GO:0008134 GO_REF:0000024 ISS UniProtKB:P30681 F High mobility group protein B2 HMGB2|HMG2 protein taxon:9913 20150512 AgBase
• UniProtKB P40673 HMGB2 enables GO:0008134 GO_REF:0000024 ISS UniProtKB:Q3U566 F High mobility group protein B2 HMGB2|HMG2 protein taxon:9913 20150512 AgBase
• UniProtKB P46282 IL12B involved_in GO:0032609 PMID:12133628 IDA P Interleukin-12 subunit beta IL12B protein taxon:9913 20150131 AgBase
• UniProtKB P48035 FABP4 involved_in GO:0001816 GO_REF:0000024 ISS UniProtKB:P04117 P Fatty acid-binding protein, adipocyte FABP4 protein taxon:9913 20160205 AgBase
• UniProtKB P54349 IL12A involved_in GO:0032609 PMID:12133628 IDA P Interleukin-12 subunit alpha IL12A protein taxon:9913 20150131 AgBase
• UniProtKB P81287 ANXA5 located_in GO:0005622 GO_REF:0000024 ISS UniProtKB:P08758 C Annexin A5 ANXA5|ANX5 protein taxon:9913 20061003 AgBase
• UniProtKB Q2HJ92 PRKRA located_in GO:0005622 GO_REF:0000024 ISS UniProtKB:Q9WTX2 C Interferon-inducible double-stranded RNA-dependent protein kinase activator A PRKRA protein taxon:9913 20070616 AgBase
• UniProtKB Q5E9D1 SUMO1 enables GO:0008134 GO_REF:0000024 ISS UniProtKB:P63166 F Small ubiquitin-related modifier 1 SUMO1 protein taxon:9913 20150116 AgBase
• Xenbase XB-GENE-6254630 sumo1.L enables GO:0008134 GO_REF:0000024 ISS UniProtKB:P63166 F small ubiquitin like modifier 1 L homeolog dap1|gmp1|ofc10|pic1|senp2|smt3|smt3c|sumo-1|sumo1-a|sumo1-b|ubl1|xsumo-1|xsumo1 protein taxon:8355 20150116 AgBase
• Xenbase XB-GENE-978491 sumo1 enables GO:0008134 GO_REF:0000024 ISS UniProtKB:P63166 F small ubiquitin like modifier 1 dap1|gmp1|ofc10|pic1|senp2|smt3|smt3c|sumo-1|sumo1-a|sumo1-b|ubl1|xsumo-1|xsumo1 protein taxon:8364 20150116 AgBase
• Xenbase XB-GENE-978496 sumo1.S enables GO:0008134 GO_REF:0000024 ISS UniProtKB:P63166 F small ubiquitin like modifier 1 S homeolog dap1|gmp1|ofc10|pic1|senp2|smt3|smt3c|sumo-1|sumo1-a|sumo1-b|ubl1|xsumo-1|xsumo1 protein taxon:8355 20150116 AgBase
• UniProtKB A0A1D5PFN2 PALM located_in GO:0005622 PMID:9813098 IDA C Paralemmin PALM protein taxon:9031 20170202 AgBase part_of(UBERON:0000955) UniProtKB:A0A1D5PFN2
• UniProtKB O93345 Lef-1 enables GO:0008134 PMID:15642085 ISS UniProtKB:P27782 F HMG box domain-containing protein Lef-1|LEF-1|LEF1 protein taxon:9031 20130311 AgBase UniProtKB:O93345
• UniProtKB Q9YGL6 PALM located_in GO:0005622 PMID:9813098 IDA C Paralemmin-1 PALM protein taxon:9031 20170202 AgBase part_of(UBERON:0000955) UniProtKB:Q9YGL6-2
• UniProtKB Q9YGL6 PALM located_in GO:0005622 PMID:9813098 IDA C Paralemmin-1 PALM protein taxon:9031 20170202 AgBase part_of(UBERON:0000955) UniProtKB:Q9YGL6-3
• UniProtKB R4GKC8 PDLIM7 enables GO:0008134 PMID:15302601 IPI UniProtKB:O93288 F PDZ and LIM domain 7 PDLIM7 protein taxon:9031 20150408 AgBase UniProtKB:R4GKC8
• UniProtKB R4GKC8 PDLIM7 enables GO:0008134 PMID:15302601 IPI UniProtKB:Q9PWE8 F PDZ and LIM domain 7 PDLIM7 protein taxon:9031 20150408 AgBase UniProtKB:R4GKC8
• UniProtKB F1NPU8 HMGB2 enables GO:0008134 GO_REF:0000024 ISS UniProtKB:P30681 F HMG box domain-containing protein HMGB2 protein taxon:9031 20150512 AgBase
• UniProtKB F1NPU8 HMGB2 enables GO:0008134 GO_REF:0000024 ISS UniProtKB:Q3U566 F HMG box domain-containing protein HMGB2 protein taxon:9031 20150512 AgBase
• UniProtKB O42410 IKZF1 involved_in GO:0002377 PMID:20602434 TAS P DNA-binding protein Ikaros IKZF1|IK|IKAROS|ZNFN1A1 protein taxon:9031 20120130 AgBase
• UniProtKB O42410 IKZF1 involved_in GO:0016049 PMID:20602434 TAS P DNA-binding protein Ikaros IKZF1|IK|IKAROS|ZNFN1A1 protein taxon:9031 20120130 AgBase
• UniProtKB P11029 ACAC involved_in GO:0006810 PMID:20816383 TAS P Acetyl-CoA carboxylase ACAC protein taxon:9031 20130306 AgBase
• UniProtKB P63283 UBE2I enables GO:0008134 PMID:23382206 IPI UniProtKB:P48434 F SUMO-conjugating enzyme UBC9 UBE2I|UBC9|UBCE9 protein taxon:9031 20140514 AgBase
• UniProtKB Q00649 HSPB1 located_in GO:0005622 PMID:15135047 ISS UniProtKB:P14602 C Heat shock protein beta-1 HSPB1 protein taxon:9031 20140201 AgBase
• UniProtKB Q05423 FABP7 enables GO:0008134 PMID:10090146 TAS F Fatty acid-binding protein, brain FABP7 protein taxon:9031 20100429 AgBase
• UniProtKB Q679P3 PDLIM7 enables GO:0008134 PMID:15302601 IPI UniProtKB:O93288 F PDZ and LIM domain protein 7 PDLIM7|LMP|RCJMB04_14g20 protein taxon:9031 20150408 AgBase
• UniProtKB Q679P3 PDLIM7 enables GO:0008134 PMID:15302601 IPI UniProtKB:Q9PWE8 F PDZ and LIM domain protein 7 PDLIM7|LMP|RCJMB04_14g20 protein taxon:9031 20150408 AgBase
• UniProtKB Q8QGH2 SUMO1 enables GO:0008134 GO_REF:0000024 ISS UniProtKB:P63166 F Small ubiquitin-related modifier 1 SUMO1|RCJMB04_2j18 protein taxon:9031 20150116 AgBase
• UniProtKB Q8QGW7 LITAF involved_in GO:0001816 PMID:18539728 TAS P Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog LITAF|SIMPLE protein taxon:9031 20090716 AgBase
• UniProtKB Q90998 TGFBR3 involved_in GO:0016049 PMID:8167376 ISA UniProtKB:P26342 P ZP domain-containing protein TGFBR3 protein taxon:9031 20091203 AgBase
• UniProtKB Q91035 SHH involved_in GO:0090269 PMID:10524628 IMP P Sonic hedgehog protein SHH protein taxon:9031 20141202 AgBase
• UniProtKB Q91035 SHH involved_in GO:0090269 PMID:9187149 IDA P Sonic hedgehog protein SHH protein taxon:9031 20150522 AgBase
• UniProtKB Q9YGL6 PALM located_in GO:0005622 PMID:9813098 IDA C Paralemmin-1 PALM protein taxon:9031 20170202 AgBase part_of(UBERON:0000955)

gorule-0000013

GORULE:0000013: Taxon-appropriate annotation check

• total: 4

messages

• UniProtKB O93345 Lef-1 involved_in GO:0021542 PMID:15642085 ISS UniProtKB:P27782 P HMG box domain-containing protein Lef-1|LEF-1|LEF1 protein taxon:9031 20130311 AgBase UniProtKB:O93345
• UniProtKB O93345 Lef-1 involved_in GO:0021766 GO_REF:0000024 ISS UniProtKB:P27782 P HMG box domain-containing protein Lef-1|LEF-1|LEF1 protein taxon:9031 20100127 AgBase UniProtKB:O93345
• UniProtKB O93345 Lef-1 involved_in GO:0021766 PMID:15642085 ISS UniProtKB:P27782 P HMG box domain-containing protein Lef-1|LEF-1|LEF1 protein taxon:9031 20130311 AgBase UniProtKB:O93345
• UniProtKB P08998 GH involved_in GO:0035846 PMID:24744268 IDA P Somatotropin GH protein taxon:9031 20150219 AgBase

gorule-0000020

Violates GORULE:0000020

• total: 3

messages

• UniProtKB I3LVS7 RHOA involved_in GO:0060548 GO_REF:0000024 ISS UniProtKB:P61589 P Ras homolog family member A RHOA protein taxon:9823 20150916 AgBase
• UniProtKB Q9UHD4 CIDEB involved_in GO:0010942 PMID:12595532 IDA P Lipid transferase CIDEB CIDEB protein taxon:9606 20141208 AgBase
• UniProtKB P05153 PCK1 involved_in GO:0007568 PMID:3094011 ISA UniProtKB:P07379 P Phosphoenolpyruvate carboxykinase, cytosolic [GTP] PCK1 protein taxon:9031 20160204 AgBase

gorule-0000046

GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms

• total: 50

messages

• UniProtKB I3LKS9 NRF1 enables GO:0042803 GO_REF:0000024 ISS UniProtKB:Q90979 F Nuclear respiratory factor 1 NLS/DNA-binding dimerisation domain-containing protein NRF1 protein taxon:9823 20150422 AgBase UniProtKB:I3LKS9
• ZFIN ZDB-GENE-001221-1 nrf1 enables GO:0042803 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:Q90979 F nuclear respiratory factor 1 not really finished|nrf|nrl protein_coding_gene taxon:7955 20150422 AgBase UniProtKB:Q90X44-1
• RGD 1304603 Nrf1 enables GO:0042803 GO_REF:0000024|RGD:1600115 ISS UniProtKB:Q90979 F nuclear respiratory factor 1 gene taxon:10116 20150422 AgBase UniProtKB:B1WC04
• RGD 70491 Tgfb2 enables GO:0042803 GO_REF:0000024|RGD:1600115 ISS UniProtKB:P61812 F transforming growth factor, beta 2 gene taxon:10116 20141202 AgBase UniProtKB:Q07257-2
• RGD 70907 Actn1 enables GO:0042803 GO_REF:0000024|RGD:1600115 ISS UniProtKB:P05094-2 F actinin, alpha 1 gene taxon:10116 20150407 AgBase UniProtKB:Q6T487
• UniProtKB Q16656 NRF1 enables GO:0042803 GO_REF:0000024 ISS UniProtKB:Q90979 F Nuclear respiratory factor 1 NRF1 protein taxon:9606 20150422 AgBase
• UniProtKB Q99836 MYD88 enables GO:0043621 PMID:22155231 IDA F Myeloid differentiation primary response protein MyD88 MYD88 protein taxon:9606 20160520 AgBase
• UniProtKB A4FUX1 CIDEA enables GO:0042803 GO_REF:0000024 ISS UniProtKB:O70302 F CIDE-N domain-containing protein CIDEA protein taxon:9913 20160205 AgBase
• UniProtKB P00257 FDX1 enables GO:0042803 PMID:12069587 IDA F Adrenodoxin, mitochondrial FDX1|ADX protein taxon:9913 20060308 AgBase
• UniProtKB P02663 CSN1S2 enables GO:0042803 PMID:8186264 IDA F Alpha-S2-casein CSN1S2 protein taxon:9913 20150522 AgBase
• UniProtKB P02666 CSN2 enables GO:0042803 PMID:8186264 IDA F Beta-casein CSN2 protein taxon:9913 20150522 AgBase
• UniProtKB P18203 FKBP1A enables GO:0042803 PMID:11341768 ISA UniProtKB:P26883 F Peptidyl-prolyl cis-trans isomerase FKBP1A FKBP1A|FKBP1 protein taxon:9913 20140902 AgBase
• UniProtKB P21214 TGFB2 enables GO:0042803 GO_REF:0000024 ISS UniProtKB:P61812 F Transforming growth factor beta-2 proprotein TGFB2 protein taxon:9913 20141202 AgBase
• UniProtKB P41541 USO1 involved_in GO:0051260 PMID:1512287 IDA P General vesicular transport factor p115 USO1|VDP protein taxon:9913 20150201 AgBase
• UniProtKB P42917 INHBB enables GO:0042803 GO_REF:0000024 ISS UniProtKB:P09529 F Inhibin beta B chain INHBB protein taxon:9913 20070131 AgBase
• UniProtKB Q28204 KCNMA1 involved_in GO:0051260 PMID:8973172 ISA UniProtKB:Q08460 P Calcium-activated potassium channel subunit alpha-1 KCNMA1|KCNMA protein taxon:9913 20090416 AgBase
• UniProtKB Q2KJ63 KLKB1 enables GO:0042803 PMID:8186264 IDA F Plasma kallikrein KLKB1 protein taxon:9913 20150522 AgBase
• UniProtKB Q3B7N2 ACTN1 enables GO:0042803 GO_REF:0000024 ISS UniProtKB:P05094-2 F Alpha-actinin-1 ACTN1 protein taxon:9913 20150407 AgBase
• UniProtKB Q76LV2 HSP90AA1 enables GO:0042803 GO_REF:0000024 ISS UniProtKB:P07901 F Heat shock protein HSP 90-alpha HSP90AA1|HSP90A|HSPCA protein taxon:9913 20061006 AgBase
• UniProtKB P05094 ACTN1 enables GO:0042803 PMID:8037676 IDA F Alpha-actinin-1 ACTN1 protein taxon:9031 20150407 AgBase UniProtKB:P05094-2
• UniProtKB Q5ZHP4 TPD52 enables GO:0042803 GO_REF:0000024 ISS UniProtKB:P55327 F Tumor protein D52 TPD52|RCJMB04_34n23 protein taxon:9031 20061004 AgBase UniProtKB:Q5ZHP4
• UniProtKB Q16656 NRF1 enables GO:0042803 GO_REF:0000024 ISS UniProtKB:Q90979 F Nuclear respiratory factor 1 NRF1 protein taxon:9606 20150422 AgBase UniProtKB:Q16656-4
• UniProtKB E1BSJ7 SKI enables GO:0042803 PMID:9927733 IMP F Ski oncogene SKI protein taxon:9031 20150414 AgBase
• UniProtKB F1NNP2 TGFB2 enables GO:0042803 GO_REF:0000024 ISS UniProtKB:P61812 F Transforming growth factor beta TGFB2 protein taxon:9031 20141202 AgBase
• UniProtKB F1P0N0 SKIL enables GO:0042803 PMID:9927733 IMP F c-SKI SMAD4-binding domain-containing protein SKIL protein taxon:9031 20150414 AgBase
• UniProtKB F1P3Y2 RHO enables GO:0042803 PMID:2605226 IDA F Rhodopsin RHO protein taxon:9031 20150604 AgBase
• UniProtKB P02504 CRYAA involved_in GO:0051260 PMID:15135047 ISS UniProtKB:P02489 P Alpha-crystallin A chain CRYAA protein taxon:9031 20140201 AgBase
• UniProtKB P05094 ACTN1 enables GO:0042803 PMID:8037676 IDA F Alpha-actinin-1 ACTN1 protein taxon:9031 20150407 AgBase
• UniProtKB P12003 VCL enables GO:0042803 PMID:8037676 IDA F Vinculin VCL|VINC1 protein taxon:9031 20150407 AgBase
• UniProtKB P14105 MYH9 enables GO:0043621 PMID:1512291 IMP F Myosin-9 MYH9 protein taxon:9031 20061030 AgBase
• UniProtKB P22328 RHO enables GO:0042803 PMID:2605226 IDA F Rhodopsin RHO protein taxon:9031 20150604 AgBase
• UniProtKB P22328 RHO involved_in GO:0070207 PMID:2605226 IDA P Rhodopsin RHO protein taxon:9031 20150604 AgBase
• UniProtKB P22329 P22329 enables GO:0042803 PMID:2605226 IDA F Red-sensitive opsin protein taxon:9031 20150604 AgBase
• UniProtKB P22329 P22329 involved_in GO:0070207 PMID:2605226 IDA P Red-sensitive opsin protein taxon:9031 20150604 AgBase
• UniProtKB P30371 TGFB2 enables GO:0042803 PMID:10401723 ISA UniProtKB:P61812 F Transforming growth factor beta-2 proprotein TGFB2 protein taxon:9031 20090424 AgBase
• UniProtKB P38529 HSF1 enables GO:0042803 PMID:9716376 IDA F Heat shock factor protein 1 HSF1 protein taxon:9031 20151228 AgBase
• UniProtKB P38529 HSF1 involved_in GO:0070207 PMID:9716376 IDA P Heat shock factor protein 1 HSF1 protein taxon:9031 20151228 AgBase happens_during(GO:0010243),happens_during(GO:0014070)
• UniProtKB P38530 HSF2 enables GO:0042803 PMID:9716376 IDA F Heat shock factor protein 2 HSF2 protein taxon:9031 20151228 AgBase
• UniProtKB P38530 HSF2 involved_in GO:0070207 PMID:9716376 IDA P Heat shock factor protein 2 HSF2 protein taxon:9031 20151228 AgBase happens_during(GO:0010243),happens_during(GO:0014070)
• UniProtKB P38531 HSF3 enables GO:0042803 PMID:21813737 IDA F Heat shock factor protein 3 HSF3 protein taxon:9031 20151224 AgBase
• UniProtKB P38531 HSF3 enables GO:0042803 PMID:9716376 IDA F Heat shock factor protein 3 HSF3 protein taxon:9031 20151228 AgBase
• UniProtKB P38531 HSF3 involved_in GO:0070207 PMID:21813737 IDA P Heat shock factor protein 3 HSF3 protein taxon:9031 20151224 AgBase
• UniProtKB P38531 HSF3 involved_in GO:0070207 PMID:9716376 IDA P Heat shock factor protein 3 HSF3 protein taxon:9031 20151228 AgBase happens_during(GO:0010243),happens_during(GO:0014070)
• UniProtKB P49140 SKI enables GO:0042803 PMID:9927733 IMP F Ski oncogene SKI protein taxon:9031 20150414 AgBase
• UniProtKB Q90827 NEL enables GO:0043621 PMID:22157752 IDA F Protein NEL NEL protein taxon:9031 20210227 AgBase
• UniProtKB Q90ZK6 ACVR1 enables GO:0042803 PMID:10885742 ISA UniProtKB:Q04771 F Activin receptor type-1 ACVR1 protein taxon:9031 20090113 AgBase
• UniProtKB Q98953 S100A6 enables GO:0042803 PMID:8925441 IDA F Protein S100-A6 S100A6 protein taxon:9031 20150421 AgBase
• UniProtKB Q9DG23 BVES involved_in GO:0051260 PMID:12815060 IDA P Blood vessel epicardial substance BVES|POP1|POPDC1 protein taxon:9031 20150402 AgBase
• UniProtKB Q9IA05 FZD4 enables GO:0042803 PMID:11044615 ISO UniProtKB:Q9ULV1 F Frizzled-4 FZD4|FZ4 protein taxon:9031 20120809 AgBase
• UniProtKB Q28265 KCNMA1 involved_in GO:0051260 PMID:8973172 ISA UniProtKB:Q08460 P Calcium-activated potassium channel subunit alpha-1 KCNMA1|KCNMA protein taxon:9615 20090416 AgBase

gorule-0000061

GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0001025 should be one of BFO:0000050

• total: 34

messages

• UniProtKB F2Z594 HMGB1 located_in GO:0000785 PMID:2465778 IDA C HMG box domain-containing protein HMGB1 protein taxon:9823 20150506 AgBase part_of(UBERON:0002370) UniProtKB:F2Z594
• UniProtKB F2Z594 HMGB1 located_in GO:0000785 PMID:3571199 IDA C HMG box domain-containing protein HMGB1 protein taxon:9823 20150506 AgBase part_of(UBERON:0002370) UniProtKB:F2Z594
• MGI MGI:96157 Hmgb2 located_in GO:0000785 MGI:MGI:5490149|PMID:23495099 IDA C high mobility group box 2 Hmg2|HMG-2 protein_coding_gene taxon:10090 20150512 AgBase
• MGI MGI:101893 Pou5f1 located_in GO:0000785 MGI:MGI:5490149|PMID:23495099 IDA C POU domain, class 5, transcription factor 1 Oct-3|Oct-3/4|Oct3/4|Oct4|Oct-4|Otf3|Otf-3|Otf3g|Otf3-rs7|Otf4|Otf-4 protein_coding_gene taxon:10090 20150512 AgBase
• UniProtKB F1RJ01 HMGB2 located_in GO:0000785 PMID:2465778 IDA C HMG box domain-containing protein HMGB2 protein taxon:9823 20150506 AgBase part_of(UBERON:0002370)
• UniProtKB F1RJ01 HMGB2 located_in GO:0000785 PMID:3571199 IDA C HMG box domain-containing protein HMGB2 protein taxon:9823 20150506 AgBase part_of(UBERON:0002370)
• UniProtKB P12682 HMGB1 located_in GO:0000785 PMID:2465778 IDA C High mobility group protein B1 HMGB1|HMG1 protein taxon:9823 20150506 AgBase part_of(UBERON:0002370)
• UniProtKB P12682 HMGB1 located_in GO:0000785 PMID:3571199 IDA C High mobility group protein B1 HMGB1|HMG1 protein taxon:9823 20150506 AgBase part_of(UBERON:0002370)
• RGD 1359491 Pou5f1 located_in GO:0000785 GO_REF:0000024|RGD:1600115 ISS UniProtKB:P20263 C POU class 5 homeobox 1 gene taxon:10116 20150512 AgBase
• RGD 1559962 Hmgb2-ps6 located_in GO:0000785 GO_REF:0000024|RGD:1600115 ISS UniProtKB:P30681 C high mobility group box 2, pseudogene 6 gene taxon:10116 20150512 AgBase
• RGD 1559962 Hmgb2-ps6 located_in GO:0000785 GO_REF:0000024|RGD:1600115 ISS UniProtKB:Q3U566 C high mobility group box 2, pseudogene 6 gene taxon:10116 20150512 AgBase
• RGD 1561694 RGD1561694 located_in GO:0000785 GO_REF:0000024|RGD:1600115 ISS UniProtKB:P30681 C similar to High mobility group protein 2 (HMG-2) gene taxon:10116 20150512 AgBase
• RGD 1561694 RGD1561694 located_in GO:0000785 GO_REF:0000024|RGD:1600115 ISS UniProtKB:Q3U566 C similar to High mobility group protein 2 (HMG-2) gene taxon:10116 20150512 AgBase
• RGD 1564519 Hmgb2l1 located_in GO:0000785 GO_REF:0000024|RGD:1600115 ISS UniProtKB:P30681 C high mobility group box 2-like 1 gene taxon:10116 20150512 AgBase
• RGD 1564519 Hmgb2l1 located_in GO:0000785 GO_REF:0000024|RGD:1600115 ISS UniProtKB:Q3U566 C high mobility group box 2-like 1 gene taxon:10116 20150512 AgBase
• RGD 69291 Hmgb2 located_in GO:0000785 GO_REF:0000024|RGD:1600115 ISS UniProtKB:P30681 C high mobility group box 2 gene taxon:10116 20150512 AgBase
• RGD 69291 Hmgb2 located_in GO:0000785 GO_REF:0000024|RGD:1600115 ISS UniProtKB:Q3U566 C high mobility group box 2 gene taxon:10116 20150512 AgBase
• UniProtKB P26583 HMGB2 located_in GO:0000785 GO_REF:0000024 ISS UniProtKB:P30681 C High mobility group protein B2 HMGB2|HMG2 protein taxon:9606 20150512 AgBase
• UniProtKB P26583 HMGB2 located_in GO:0000785 GO_REF:0000024 ISS UniProtKB:Q3U566 C High mobility group protein B2 HMGB2|HMG2 protein taxon:9606 20150512 AgBase
• UniProtKB P10103 HMGB1 located_in GO:0000785 GO_REF:0000024 ISS UniProtKB:F2Z594 C High mobility group protein B1 HMGB1|HMG1 protein taxon:9913 20150506 AgBase
• UniProtKB P10103 HMGB1 located_in GO:0000785 GO_REF:0000024 ISS UniProtKB:P12682 C High mobility group protein B1 HMGB1|HMG1 protein taxon:9913 20150506 AgBase
• UniProtKB P40673 HMGB2 located_in GO:0000785 GO_REF:0000024 ISS UniProtKB:P30681 C High mobility group protein B2 HMGB2|HMG2 protein taxon:9913 20150512 AgBase
• UniProtKB P40673 HMGB2 located_in GO:0000785 GO_REF:0000024 ISS UniProtKB:Q3U566 C High mobility group protein B2 HMGB2|HMG2 protein taxon:9913 20150512 AgBase
• UniProtKB Q9YH14 rbf located_in GO:0000785 PMID:2021645 IDA C ATP synthase subunit e, mitochondrial rbf|ATP5I|RCJMB04_29d3 protein taxon:9031 20150630 AgBase part_of(UBERON:0000993)|part_of(UBERON:0002106)|part_of(UBERON:0002107) UniProtKB:Q9YH14
• UniProtKB F1NPU8 HMGB2 located_in GO:0000785 GO_REF:0000024 ISS UniProtKB:P30681 C HMG box domain-containing protein HMGB2 protein taxon:9031 20150512 AgBase
• UniProtKB F1NPU8 HMGB2 located_in GO:0000785 GO_REF:0000024 ISS UniProtKB:Q3U566 C HMG box domain-containing protein HMGB2 protein taxon:9031 20150512 AgBase
• UniProtKB O42130 TOP2A located_in GO:0000792 PMID:11453553 IDA C DNA topoisomerase 2-alpha TOP2A protein taxon:9031 20060829 AgBase
• UniProtKB O42131 TOP2B NOT|located_in GO:0000792 PMID:11453553 IDA C DNA topoisomerase 2-beta TOP2B protein taxon:9031 20060829 AgBase
• UniProtKB O73790 SERPINB10 located_in GO:0000785 PMID:1729133 IDA C Heterochromatin-associated protein MENT SERPINB10|MENT protein taxon:9031 20150701 AgBase part_of(CL:0000562)
• UniProtKB P07812 PGR located_in GO:0000785 PMID:2021645 IDA C Progesterone receptor PGR|NR3C3 protein taxon:9031 20150427 AgBase part_of(UBERON:0000993),part_of(UBERON:0002107)
• UniProtKB P38530 HSF2 located_in GO:0000785 PMID:21813737 IDA C Heat shock factor protein 2 HSF2 protein taxon:9031 20151224 AgBase exists_during(GO:0009408)
• UniProtKB P38531 HSF3 located_in GO:0000785 PMID:21813737 IDA C Heat shock factor protein 3 HSF3 protein taxon:9031 20151224 AgBase exists_during(GO:0009408)
• UniProtKB P67881 CYC colocalizes_with GO:0043293 PMID:12220121 IDA C Cytochrome c CYC protein taxon:9031 20110427 AgBase
• UniProtKB Q9DDW4 CITED2 located_in GO:0000785 PMID:11044621 ISA UniProtKB:O35740 C Cited2/melanocyte specific gene-related gene 1 MRG1 CITED2 protein taxon:9031 20120612 AgBase