Table of contents

Report

Group: genedb - Dataset: genedb_lmajor

SUMMARY

This report generated on 2024-01-18

Header From Original Association File

!gaf-version: 1.0

Contents

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other

MESSAGES

gorule-0000001

GAF lines are parsed according to GAF 2.2 specifications

Messages

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No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515'

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IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC

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IPI should not be used with GO:0003824 catalytic activity or descendents

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No annotations should be made to uninformative high level terms

Messages

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ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

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Taxon-appropriate annotation check

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Dual species taxon check

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With/From: IC annotations require a With/From GO ID

Messages

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IDA annotations must not have a With/From entry

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IPI annotations require a With/From entry

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

Messages

gorule-0000028

GO aspect should match the term's namespace; otherwise it is repaired to the appropriate aspect

gorule-0000029

IEAs should be less than one year old.

Messages

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Obsolete GO_REFs are not allowed

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IBA annotations should ONLY be assigned_by GO_Central and have GO_REF:0000033 as a reference

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Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

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Qualifier: IKR evidence code requires a NOT qualifier

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Check for valid combination of evidence code and GO_REF

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The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

Messages

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Annotations to ISS, ISA and ISO should not be self-referential

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References should have only one ID per ID space

Messages

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Group specific filter rules should be applied to annotations

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Object extensions should conform to the extensions-patterns.yaml file in metadata

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GAF Version 2.0 and 2.1 are converted into GAF Version 2.2

Messages

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Allowed gene product to term relations (gp2term)

Messages

other

Predictions

GO:0051726 regulation of cell cycle AnnotationPropagation P GO:0004693 cyclin-dependent protein serine/threonine kinase activity ISO
GO:0005739 mitochondrion AnnotationPropagation C GO:0080156 mitochondrial mRNA modification ISO
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity ISM
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0015506 nucleoside:proton symporter activity ISO
GO:1901642 nucleoside transmembrane transport AnnotationPropagation P GO:0015506 nucleoside:proton symporter activity ISO
GO:0005929 cilium AnnotationPropagation C GO:0035735 intraciliary transport involved in cilium assembly ISO
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0051920 peroxiredoxin activity IDA
GO:0006417 regulation of translation AnnotationPropagation P GO:0045182 translation regulator activity IDA
GO:0005739 mitochondrion AnnotationPropagation C GO:0006264 mitochondrial DNA replication ISO
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity ISM
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0051920 peroxiredoxin activity IDA
GO:0051726 regulation of cell cycle AnnotationPropagation P GO:0097472 cyclin-dependent protein kinase activity ISO
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity ISM
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0051920 peroxiredoxin activity IDA
GO:0034204 lipid translocation AnnotationPropagation P GO:0090556 phosphatidylserine floppase activity IMP
GO:0015914 phospholipid transport AnnotationPropagation P GO:0090556 phosphatidylserine floppase activity IMP
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity ISM
GO:0015789 UDP-N-acetylgalactosamine transmembrane transport AnnotationPropagation P GO:0005463 UDP-N-acetylgalactosamine transmembrane transporter activity ISO
GO:0005739 mitochondrion AnnotationPropagation C GO:0032979 protein insertion into mitochondrial inner membrane from matrix ISA
GO:0005929 cilium AnnotationPropagation C GO:0035735 intraciliary transport involved in cilium assembly ISO
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0051920 peroxiredoxin activity IDA
GO:0005929 cilium AnnotationPropagation C GO:0035735 intraciliary transport involved in cilium assembly ISO
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0097222 mitochondrial mRNA polyadenylation ISO
GO:0051726 regulation of cell cycle AnnotationPropagation P GO:0097472 cyclin-dependent protein kinase activity ISO
GO:0005739 mitochondrion AnnotationPropagation C GO:1900864 mitochondrial RNA modification ISO
GO:0005739 mitochondrion AnnotationPropagation C GO:1900864 mitochondrial RNA modification ISO
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation ISO
GO:0006338 chromatin remodeling AnnotationPropagation P GO:0010485 histone H4 acetyltransferase activity ISO
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity ISM
GO:0005929 cilium AnnotationPropagation C GO:0035735 intraciliary transport involved in cilium assembly ISO
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity ISO
GO:0098655 monoatomic cation transmembrane transport AnnotationPropagation P GO:0046583 monoatomic cation efflux transmembrane transporter activity IGI
GO:0005929 cilium AnnotationPropagation C GO:0035735 intraciliary transport involved in cilium assembly ISO
GO:0030001 metal ion transport AnnotationPropagation P GO:0046873 metal ion transmembrane transporter activity IMP
GO:0098655 monoatomic cation transmembrane transport AnnotationPropagation P GO:0046873 metal ion transmembrane transporter activity IMP
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0051920 peroxiredoxin activity IDA
GO:0098655 monoatomic cation transmembrane transport AnnotationPropagation P GO:0046583 monoatomic cation efflux transmembrane transporter activity ISM
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0051920 peroxiredoxin activity IDA
GO:0005929 cilium AnnotationPropagation C GO:0035721 intraciliary retrograde transport ISO
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity ISM
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0051920 peroxiredoxin activity IDA
GO:0005929 cilium AnnotationPropagation C GO:0035735 intraciliary transport involved in cilium assembly ISO
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity ISM
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity ISM
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0034551 mitochondrial respiratory chain complex III assembly ISO

Predictions (experimental)