Table of contents

Report

Group: aspgd - Dataset: aspgd

SUMMARY

This report generated on 2022-03-23

Header From Original Association File

!gaf-version: 2.0
! File name: gene_association.aspgd
! Organism 1: Aspergillus nidulans FGSC A4, genome version: s10-m04-r16, taxon: 227321
! Organism 2: Aspergillus fumigatus Af293, genome version: s03-m05-r17, taxon: 330879
! Organism 3: Aspergillus niger CBS 513.88, genome version: s01-m07-r13, taxon: 425011
! Organism 4: Aspergillus oryzae RIB40, genome version: s01-m09-r14, taxon: 510516
! Organism 5: Aspergillus terreus NIH2624, taxon: 341663
! Organism 6: Aspergillus brasiliensis CBS 101740, taxon: 767769
! Organism 7: Aspergillus zonatus, taxon: 41063
! Organism 8: Aspergillus acidus CBS 106.47, taxon: 1137211
! Organism 9: Aspergillus wentii DTO 134E9, taxon: 1073089
! Organism 10: Aspergillus versicolor, taxon: 46472
! Organism 11: Aspergillus carbonarius ITEM 5010, taxon: 602072
! Organism 12: Aspergillus aculeatus ATCC16872, taxon: 690307
! Organism 13: Aspergillus glaucus CBS 516.65, taxon: 1160497
! Organism 14: Neosartorya fischeri NRRL 181, taxon: 331117
! Organism 15: Aspergillus clavatus NRRL 1, taxon: 344612
! Organism 16: Aspergillus flavus NRRL 3357, taxon: 332952
! Organism 17: Aspergillus tubingensis CBS 134.48, taxon: 767770
! Organism 18: Aspergillus sydowii, taxon: 75750
! Organism 19: Aspergillus fumigatus A1163, taxon: 451804
! Organism 20: Aspergillus kawachii, taxon: 1033177
! Date created: Wed Apr 1 01:23:24 2020
! Created by: The Aspergillus Genome Database (http://www.aspergillusgenome.org/)
! Contact Email: aspergillus-curator AT lists DOT stanford DOT edu
! Funding: NIAID at US NIH, grant number R01-AI077599-01
!

Contents

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other

MESSAGES

gorule-0000002

No 'NOT' annotations to 'protein binding ; GO:0005515'

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IEP and HEP usage is restricted to terms from the Biological Process ontology

Messages

gorule-0000007

IPI should not be used with GO:0003824 catalytic activity or descendents

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No annotations should be made to uninformative high level terms

Messages

gorule-0000011

ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

gorule-0000013

Taxon-appropriate annotation check

Messages

gorule-0000015

Dual species taxon check

gorule-0000016

With/From: IC annotations require a With/From GO ID

gorule-0000017

IDA annotations must not have a With/From entry

gorule-0000018

IPI annotations require a With/From entry

Messages

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

Messages

gorule-0000028

Aspect can only be one of C, P, F and should be repaired using the GO term

gorule-0000029

IEAs should be less than one year old.

Messages

gorule-0000030

Deprecated GO_REFs are not allowed

gorule-0000037

IBA annotations should ONLY be assigned_by GO_Central and have PMID:21873635 as a reference

gorule-0000039

Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

gorule-0000042

Qualifier: IKR evidence code requires a NOT qualifier

gorule-0000043

Check for valid combination of evidence code and GO_REF

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms.

Messages

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Annotations to ISS, ISA and ISO should not be self-referential

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References should have only one ID per ID space

gorule-0000057

Group specific filter rules should be applied to annotations

gorule-0000058

Object extensions should conform to the extensions-patterns.yaml file in metadata

gorule-0000059

GAF Version 2.0 and 2.1 are converted into GAF Version 2.2

Messages

gorule-0000061

Allowed gene product to term relations (gp2term)

Messages

other

Predictions

GO:0019430 removal of superoxide radicals AnnotationPropagation P GO:0004784 superoxide dismutase activity ISS
GO:0022900 electron transport chain AnnotationPropagation P GO:0008137 NADH dehydrogenase (ubiquinone) activity RCA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0008137 NADH dehydrogenase (ubiquinone) activity RCA
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IDA
GO:0046901 tetrahydrofolylpolyglutamate biosynthetic process AnnotationPropagation P GO:0004326 tetrahydrofolylpolyglutamate synthase activity RCA
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0016567 protein ubiquitination AnnotationPropagation P GO:0004842 ubiquitin-protein transferase activity ISO
GO:0046940 nucleoside monophosphate phosphorylation AnnotationPropagation P GO:0004127 cytidylate kinase activity RCA
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0022904 respiratory electron transport chain AnnotationPropagation P GO:0004174 electron-transferring-flavoprotein dehydrogenase activity RCA
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0018215 protein phosphopantetheinylation AnnotationPropagation P GO:0008897 holo-[acyl-carrier-protein] synthase activity IDA
GO:0001522 pseudouridine synthesis AnnotationPropagation P GO:0004730 pseudouridylate synthase activity RCA
GO:1904659 glucose transmembrane transport AnnotationPropagation P GO:0005358 high-affinity glucose:proton symporter activity IMP
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0005358 high-affinity glucose:proton symporter activity IMP
GO:0000781 chromosome, telomeric region AnnotationPropagation C GO:0031509 subtelomeric heterochromatin assembly IMP
GO:0050790 regulation of catalytic activity AnnotationPropagation P GO:0005085 guanyl-nucleotide exchange factor activity ISA
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0000781 chromosome, telomeric region AnnotationPropagation C GO:0031509 subtelomeric heterochromatin assembly IMP
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0042930 enterobactin transport AnnotationPropagation P GO:0042931 enterobactin transmembrane transporter activity IDA
GO:0044718 siderophore transmembrane transport AnnotationPropagation P GO:0042931 enterobactin transmembrane transporter activity IDA
GO:0098656 anion transmembrane transport AnnotationPropagation P GO:0042931 enterobactin transmembrane transporter activity IDA
GO:0015741 fumarate transport AnnotationPropagation P GO:0005469 succinate:fumarate antiporter activity IMP
GO:0071422 succinate transmembrane transport AnnotationPropagation P GO:0005469 succinate:fumarate antiporter activity IMP
GO:0019430 removal of superoxide radicals AnnotationPropagation P GO:0004784 superoxide dismutase activity ISS
GO:0001522 pseudouridine synthesis AnnotationPropagation P GO:0004730 pseudouridylate synthase activity RCA
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IMP
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0004340 glucokinase activity IDA
GO:0051156 glucose 6-phosphate metabolic process AnnotationPropagation P GO:0004340 glucokinase activity IDA
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0004335 galactokinase activity RCA
GO:0046834 lipid phosphorylation AnnotationPropagation P GO:0001727 lipid kinase activity RCA
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0016571 histone methylation AnnotationPropagation P GO:0008469 histone-arginine N-methyltransferase activity IDA
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0015753 D-xylose transmembrane transport AnnotationPropagation P GO:0015148 D-xylose transmembrane transporter activity IDA
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0046940 nucleoside monophosphate phosphorylation AnnotationPropagation P GO:0004798 thymidylate kinase activity RCA
GO:0071918 urea transmembrane transport AnnotationPropagation P GO:0015204 urea transmembrane transporter activity IMP
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0001522 pseudouridine synthesis AnnotationPropagation P GO:0004730 pseudouridylate synthase activity ISA
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity ISA
GO:0015698 inorganic anion transport AnnotationPropagation P GO:0005253 anion channel activity IDA
GO:0098656 anion transmembrane transport AnnotationPropagation P GO:0005253 anion channel activity IDA
GO:0001676 long-chain fatty acid metabolic process AnnotationPropagation P GO:0004467 long-chain fatty acid-CoA ligase activity RCA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004602 glutathione peroxidase activity IDA
GO:0072488 ammonium transmembrane transport AnnotationPropagation P GO:0008519 ammonium transmembrane transporter activity IDA
GO:0035269 protein O-linked mannosylation AnnotationPropagation P GO:0004169 dolichyl-phosphate-mannose-protein mannosyltransferase activity ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0004396 hexokinase activity IDA
GO:0000781 chromosome, telomeric region AnnotationPropagation C GO:0031509 subtelomeric heterochromatin assembly IMP
GO:0046901 tetrahydrofolylpolyglutamate biosynthetic process AnnotationPropagation P GO:0004326 tetrahydrofolylpolyglutamate synthase activity RCA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IMP
GO:0046854 phosphatidylinositol phosphate biosynthetic process AnnotationPropagation P GO:0004430 1-phosphatidylinositol 4-kinase activity RCA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IMP
GO:1901998 toxin transport AnnotationPropagation P GO:0019534 toxin transmembrane transporter activity IMP
GO:0055085 transmembrane transport AnnotationPropagation P GO:0019534 toxin transmembrane transporter activity IMP
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004096 catalase activity IDA
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0003872 6-phosphofructokinase activity RCA
GO:0061615 glycolytic process through fructose-6-phosphate AnnotationPropagation P GO:0003872 6-phosphofructokinase activity RCA
GO:0046940 nucleoside monophosphate phosphorylation AnnotationPropagation P GO:0004017 adenylate kinase activity IDA
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0046940 nucleoside monophosphate phosphorylation AnnotationPropagation P GO:0004017 adenylate kinase activity IDA
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0004747 ribokinase activity RCA
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0046854 phosphatidylinositol phosphate biosynthetic process AnnotationPropagation P GO:0004430 1-phosphatidylinositol 4-kinase activity RCA
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IMP
GO:0015807 L-amino acid transport AnnotationPropagation P GO:0015193 L-proline transmembrane transporter activity IDA
GO:0035524 proline transmembrane transport AnnotationPropagation P GO:0015193 L-proline transmembrane transporter activity IDA
GO:0015804 neutral amino acid transport AnnotationPropagation P GO:0015193 L-proline transmembrane transporter activity IDA
GO:0098655 cation transmembrane transport AnnotationPropagation P GO:0015193 L-proline transmembrane transporter activity IDA
GO:0098656 anion transmembrane transport AnnotationPropagation P GO:0015193 L-proline transmembrane transporter activity IDA
GO:1902475 L-alpha-amino acid transmembrane transport AnnotationPropagation P GO:0015193 L-proline transmembrane transporter activity IDA
GO:0001676 long-chain fatty acid metabolic process AnnotationPropagation P GO:0004467 long-chain fatty acid-CoA ligase activity RCA
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0097502 mannosylation AnnotationPropagation P GO:0000030 mannosyltransferase activity RCA
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0004396 hexokinase activity RCA
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM

Predictions (experimental)