Table of contents

Report

Group: tair - Dataset: tair

SUMMARY

This report generated on 2023-03-07

Header From Original Association File

!gaf-version: 2.2
!generated-by: The Arabidopsis Information Resource (TAIR)
!URL: http://www.arabidopsis.org
!Contact Email: curator@arabidopsis.org
!date-generated: 2023-01-01

Contents

gorule-0000002

gorule-0000006

gorule-0000007

gorule-0000008

gorule-0000011

gorule-0000013

gorule-0000015

gorule-0000016

gorule-0000017

gorule-0000018

gorule-0000020

gorule-0000028

gorule-0000029

gorule-0000030

gorule-0000037

gorule-0000039

gorule-0000042

gorule-0000043

gorule-0000046

gorule-0000050

gorule-0000055

gorule-0000057

gorule-0000058

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other

MESSAGES

gorule-0000002

No 'NOT' annotations to 'protein binding ; GO:0005515'

gorule-0000006

IEP and HEP usage is restricted to terms from the Biological Process ontology

Messages

gorule-0000007

IPI should not be used with GO:0003824 catalytic activity or descendents

gorule-0000008

No annotations should be made to uninformative high level terms

Messages

gorule-0000011

ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

gorule-0000013

Taxon-appropriate annotation check

Messages

gorule-0000015

Dual species taxon check

gorule-0000016

With/From: IC annotations require a With/From GO ID

gorule-0000017

IDA annotations must not have a With/From entry

gorule-0000018

IPI annotations require a With/From entry

Messages

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

Messages

gorule-0000028

Aspect can only be one of C, P, F and should be repaired using the GO term

gorule-0000029

IEAs should be less than one year old.

gorule-0000030

Deprecated GO_REFs are not allowed

gorule-0000037

IBA annotations should ONLY be assigned_by GO_Central and have PMID:21873635 as a reference

gorule-0000039

Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

gorule-0000042

Qualifier: IKR evidence code requires a NOT qualifier

gorule-0000043

Check for valid combination of evidence code and GO_REF

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms.

Messages

gorule-0000050

Annotations to ISS, ISA and ISO should not be self-referential

gorule-0000055

References should have only one ID per ID space

gorule-0000057

Group specific filter rules should be applied to annotations

gorule-0000058

Object extensions should conform to the extensions-patterns.yaml file in metadata

gorule-0000061

Allowed gene product to term relations (gp2term)

Messages

other

Predictions

GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0006351 DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0005739 mitochondrion AnnotationPropagation C GO:0080156 mitochondrial mRNA modification IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0003333 amino acid transmembrane transport AnnotationPropagation P GO:0015171 amino acid transmembrane transporter activity ISS
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity ISS
GO:0006351 DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity ISS
GO:0051555 flavonol biosynthetic process AnnotationPropagation P GO:0045431 flavonol synthase activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006457 protein folding AnnotationPropagation P GO:0044183 protein folding chaperone IDA
GO:0090150 establishment of protein localization to membrane AnnotationPropagation P GO:0032977 membrane insertase activity IBA
GO:1902358 sulfate transmembrane transport AnnotationPropagation P GO:0015116 sulfate transmembrane transporter activity IMP
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0006351 DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0008553 P-type proton-exporting transporter activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006657 CDP-choline pathway AnnotationPropagation P GO:0004142 diacylglycerol cholinephosphotransferase activity IBA
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity IBA
GO:0005829 cytosol AnnotationPropagation C GO:0099636 cytoplasmic streaming IMP
GO:0006357 regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0006351 DNA-templated transcription AnnotationPropagation P GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0034220 monoatomic ion transmembrane transport AnnotationPropagation P GO:0015276 ligand-gated monoatomic ion channel activity IBA
GO:0009536 plastid AnnotationPropagation C GO:0032544 plastid translation IGI
GO:0006338 chromatin remodeling AnnotationPropagation P GO:0042800 histone H3K4 methyltransferase activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0006351 DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0016598 protein arginylation AnnotationPropagation P GO:0004057 arginyltransferase activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006357 regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0006351 DNA-templated transcription AnnotationPropagation P GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0071806 protein transmembrane transport AnnotationPropagation P GO:0008320 protein transmembrane transporter activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0008553 P-type proton-exporting transporter activity IBA
GO:0022900 electron transport chain AnnotationPropagation P GO:0008137 NADH dehydrogenase (ubiquinone) activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0008137 NADH dehydrogenase (ubiquinone) activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015297 antiporter activity IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0005274 allantoin:proton symporter activity IBA
GO:0015720 allantoin transport AnnotationPropagation P GO:0005274 allantoin:proton symporter activity IBA
GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic AnnotationPropagation P GO:0000175 3'-5'-RNA exonuclease activity IBA
GO:0034219 carbohydrate transmembrane transport AnnotationPropagation P GO:0051119 sugar transmembrane transporter activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0022900 electron transport chain AnnotationPropagation P GO:0009055 electron transfer activity IBA
GO:1901679 nucleotide transmembrane transport AnnotationPropagation P GO:0005471 ATP:ADP antiporter activity IBA
GO:0015867 ATP transport AnnotationPropagation P GO:0005471 ATP:ADP antiporter activity IBA
GO:0015866 ADP transport AnnotationPropagation P GO:0005471 ATP:ADP antiporter activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0008506 sucrose:proton symporter activity IBA
GO:0034219 carbohydrate transmembrane transport AnnotationPropagation P GO:0008506 sucrose:proton symporter activity IBA
GO:0015770 sucrose transport AnnotationPropagation P GO:0008506 sucrose:proton symporter activity IBA
GO:0098734 macromolecule depalmitoylation AnnotationPropagation P GO:0008474 palmitoyl-(protein) hydrolase activity IDA
GO:0051170 import into nucleus AnnotationPropagation P GO:0061608 nuclear import signal receptor activity IBA
GO:0006357 regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0008420 RNA polymerase II CTD heptapeptide repeat phosphatase activity IBA
GO:0006833 water transport AnnotationPropagation P GO:0015250 water channel activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015250 water channel activity IBA
GO:0005829 cytosol AnnotationPropagation C GO:0006895 Golgi to endosome transport IDA
GO:0006357 regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0006351 DNA-templated transcription AnnotationPropagation P GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0071806 protein transmembrane transport AnnotationPropagation P GO:0015450 protein-transporting ATPase activity TAS
GO:0000165 MAPK cascade AnnotationPropagation P GO:0004708 MAP kinase kinase activity ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation IBA
GO:0005829 cytosol AnnotationPropagation C GO:0042147 retrograde transport, endosome to Golgi IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0080156 mitochondrial mRNA modification IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0005739 mitochondrion AnnotationPropagation C GO:0080156 mitochondrial mRNA modification IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015297 antiporter activity IDA
GO:0036066 protein O-linked fucosylation AnnotationPropagation P GO:0046922 peptide-O-fucosyltransferase activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006338 chromatin remodeling AnnotationPropagation P GO:0010485 histone H4 acetyltransferase activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006357 regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0006351 DNA-templated transcription AnnotationPropagation P GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:1901800 positive regulation of proteasomal protein catabolic process AnnotationPropagation P GO:0036402 proteasome-activating activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006357 regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0006351 DNA-templated transcription AnnotationPropagation P GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0015385 sodium:proton antiporter activity IBA
GO:0035725 sodium ion transmembrane transport AnnotationPropagation P GO:0015385 sodium:proton antiporter activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic AnnotationPropagation P GO:0004535 poly(A)-specific ribonuclease activity IBA
GO:0031167 rRNA methylation AnnotationPropagation P GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IGI
GO:0070588 calcium ion transmembrane transport AnnotationPropagation P GO:0005388 P-type calcium transporter activity IBA
GO:0045892 negative regulation of DNA-templated transcription AnnotationPropagation P GO:0003714 transcription corepressor activity IBA
GO:0006351 DNA-templated transcription AnnotationPropagation P GO:0003714 transcription corepressor activity IBA
GO:0003333 amino acid transmembrane transport AnnotationPropagation P GO:0015171 amino acid transmembrane transporter activity IBA
GO:0071422 succinate transmembrane transport AnnotationPropagation P GO:0015141 succinate transmembrane transporter activity IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0015385 sodium:proton antiporter activity ISS
GO:0035725 sodium ion transmembrane transport AnnotationPropagation P GO:0015385 sodium:proton antiporter activity ISS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0032508 DNA duplex unwinding AnnotationPropagation P GO:0043138 3'-5' DNA helicase activity IDA
GO:1901679 nucleotide transmembrane transport AnnotationPropagation P GO:0005471 ATP:ADP antiporter activity IBA
GO:0015867 ATP transport AnnotationPropagation P GO:0005471 ATP:ADP antiporter activity IBA
GO:0015866 ADP transport AnnotationPropagation P GO:0005471 ATP:ADP antiporter activity IBA
GO:0035442 dipeptide transmembrane transport AnnotationPropagation P GO:0071916 dipeptide transmembrane transporter activity IDA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004601 peroxidase activity IBA
GO:0001676 long-chain fatty acid metabolic process AnnotationPropagation P GO:0004467 long-chain fatty acid-CoA ligase activity IBA
GO:1903401 L-lysine transmembrane transport AnnotationPropagation P GO:0015189 L-lysine transmembrane transporter activity IBA
GO:1990822 basic amino acid transmembrane transport AnnotationPropagation P GO:0015189 L-lysine transmembrane transporter activity IBA
GO:0006338 chromatin remodeling AnnotationPropagation P GO:0046975 histone H3K36 methyltransferase activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0005739 mitochondrion AnnotationPropagation C GO:0080156 mitochondrial mRNA modification IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0006351 DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0005634 nucleus AnnotationPropagation C GO:0071037 nuclear polyadenylation-dependent snRNA catabolic process IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0006351 DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0034204 lipid translocation AnnotationPropagation P GO:0140326 ATPase-coupled intramembrane lipid transporter activity IBA
GO:0005634 nucleus AnnotationPropagation C GO:0033260 nuclear DNA replication IBA
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0008296 3'-5'-DNA exonuclease activity IBA
GO:0005794 Golgi apparatus AnnotationPropagation C GO:0032468 Golgi calcium ion homeostasis IBA
GO:0009536 plastid AnnotationPropagation C GO:0032544 plastid translation IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity IBA
GO:0035442 dipeptide transmembrane transport AnnotationPropagation P GO:0071916 dipeptide transmembrane transporter activity IGI
GO:0006913 nucleocytoplasmic transport AnnotationPropagation P GO:0017056 structural constituent of nuclear pore IBA
GO:0098655 monoatomic cation transmembrane transport AnnotationPropagation P GO:0005227 calcium activated cation channel activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0035672 oligopeptide transmembrane transport AnnotationPropagation P GO:0035673 oligopeptide transmembrane transporter activity IGI
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0055085 transmembrane transport AnnotationPropagation P GO:0005315 inorganic phosphate transmembrane transporter activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0005634 nucleus AnnotationPropagation C GO:0071035 nuclear polyadenylation-dependent rRNA catabolic process IBA
GO:1902600 proton