• Report (original)
• Predictions
• Predictions (experimental)

Group: unknown - Dataset: unknown

SUMMARY

This report generated on 2024-11-04

• Associations: 12335
• Lines in file (incl headers): 12355
• Lines skipped: 17

Header From Original Association File

!gpa-version: 1.2
!collation date: 2024-11-03
!collated from production models in https://github.com/geneontology/noctua-models/ where col1 matches rgd; special rules for MGI (https://github.com/geneontology/pipeline/issues/313)

Contents

gorule-0000001

gorule-0000002

gorule-0000005

gorule-0000006

gorule-0000007

gorule-0000008

gorule-0000011

gorule-0000013

gorule-0000015

gorule-0000016

gorule-0000017

gorule-0000018

gorule-0000020

gorule-0000022

gorule-0000026

gorule-0000029

gorule-0000030

gorule-0000037

gorule-0000039

gorule-0000042

gorule-0000043

gorule-0000046

gorule-0000050

gorule-0000055

gorule-0000058

gorule-0000061

gorule-0000063

gorule-0000064

other

MESSAGES

gorule-0000001

• total: 12

Messages

• ERROR - Invalid symbol: Problem parsing references (PMID: 11288147) -- RGD 3696 acts_upstream_of_or_within GO:0071456 PMID: 11288147 ECO:0000314 20200820 MGI noctua-model-id=gomodel:5ee8120100003562|model-state=production|contributor=https://orcid.org/0000-0003-3394-9805
• ERROR - Unknown evidence class: Expecting a known ECO class ID that maps to an ECO GAF code (ECO:0000005) -- RGD 620518 is_active_in GO:0098978 PMID:22036572 ECO:0000005 20240306 SynGO part_of(UBERON:0002421) model-state=production|contributor=https://orcid.org/0000-0002-2514-0216|noctua-model-id=gomodel:SYNGO_1398
• ERROR - Unknown evidence class: Expecting a known ECO class ID that maps to an ECO GAF code (ECO:0000005) -- RGD 620518 involved_in GO:0099502 PMID:22036572 ECO:0000005 20240306 SynGO occurs_in(GO:0098978),occurs_in(UBERON:0002421) model-state=production|contributor=https://orcid.org/0000-0002-2514-0216|noctua-model-id=gomodel:SYNGO_1398
• ERROR - Unknown evidence class: Expecting a known ECO class ID that maps to an ECO GAF code (ECO:0000005) -- RGD 620519 involved_in GO:0099502 PMID:22036572 ECO:0000005 20240306 SynGO occurs_in(GO:0098978),occurs_in(UBERON:0002421) model-state=production|contributor=https://orcid.org/0000-0002-2514-0216|noctua-model-id=gomodel:SYNGO_1399
• ERROR - Unknown evidence class: Expecting a known ECO class ID that maps to an ECO GAF code (ECO:0000005) -- RGD 620519 is_active_in GO:0098978 PMID:22036572 ECO:0000005 20240306 SynGO part_of(UBERON:0002421) model-state=production|contributor=https://orcid.org/0000-0002-2514-0216|noctua-model-id=gomodel:SYNGO_1399
• ERROR - Unknown evidence class: Expecting a known ECO class ID that maps to an ECO GAF code (ECO:0000005) -- RGD 69313 is_active_in GO:0031594 PMID:26820598 ECO:0000005 20240306 SynGO noctua-model-id=gomodel:SYNGO_2109|contributor=https://orcid.org/0000-0002-4973-5732|model-state=production|contributor=https://orcid.org/0000-0002-2514-0216|contributor=https://orcid.org/0000-0002-2286-1587
• ERROR - Unknown evidence class: Expecting a known ECO class ID that maps to an ECO GAF code (ECO:0000005) -- RGD 3728 involved_in GO:0016079 PMID:8103915 ECO:0000005 20240306 SynGO occurs_in(GO:0098978),occurs_in(UBERON:0000955) contributor=https://orcid.org/0000-0003-1542-3498|contributor=https://orcid.org/0000-0002-3898-5197|model-state=production|contributor=https://orcid.org/0000-0002-0808-7003|noctua-model-id=gomodel:SYNGO_275
• ERROR - Unknown evidence class: Expecting a known ECO class ID that maps to an ECO GAF code (ECO:0000005) -- RGD 3728 is_active_in GO:0098978 PMID:8103915 ECO:0000005 20240306 SynGO part_of(UBERON:0000955) contributor=https://orcid.org/0000-0003-1542-3498|contributor=https://orcid.org/0000-0002-3898-5197|model-state=production|contributor=https://orcid.org/0000-0002-0808-7003|noctua-model-id=gomodel:SYNGO_275
• ERROR - Unknown evidence class: Expecting a known ECO class ID that maps to an ECO GAF code (ECO:0000005) -- RGD 3198 is_active_in GO:0098978 PMID:11677256 ECO:0000005 20240306 SynGO part_of(UBERON:0002421) contributor=https://orcid.org/0000-0003-2916-7616|model-state=production|contributor=https://orcid.org/0000-0002-2514-0216|noctua-model-id=gomodel:SYNGO_4055|contributor=https://orcid.org/0000-0002-2286-1587
• ERROR - Unknown evidence class: Expecting a known ECO class ID that maps to an ECO GAF code (ECO:0000005) -- RGD 3198 involved_in GO:0099538 PMID:11677256 ECO:0000005 20240306 SynGO occurs_in(GO:0098978),occurs_in(UBERON:0002421) contributor=https://orcid.org/0000-0003-2916-7616|model-state=production|contributor=https://orcid.org/0000-0002-2514-0216|noctua-model-id=gomodel:SYNGO_4055|contributor=https://orcid.org/0000-0002-2286-1587
• ERROR - Unknown evidence class: Expecting a known ECO class ID that maps to an ECO GAF code (ECO:0000005) -- RGD 620475 involved_in GO:0099538 PMID:11677256 ECO:0000005 20240306 SynGO occurs_in(GO:0098978),occurs_in(UBERON:0002421) contributor=https://orcid.org/0000-0003-2916-7616|model-state=production|contributor=https://orcid.org/0000-0002-2514-0216|noctua-model-id=gomodel:SYNGO_4056|contributor=https://orcid.org/0000-0002-2286-1587
• ERROR - Unknown evidence class: Expecting a known ECO class ID that maps to an ECO GAF code (ECO:0000005) -- RGD 620475 is_active_in GO:0098978 PMID:11677256 ECO:0000005 20240306 SynGO part_of(UBERON:0002421) contributor=https://orcid.org/0000-0003-2916-7616|model-state=production|contributor=https://orcid.org/0000-0002-2514-0216|noctua-model-id=gomodel:SYNGO_4056|contributor=https://orcid.org/0000-0002-2286-1587

gorule-0000002

• total: 0

gorule-0000005

• total: 0

gorule-0000006

• total: 0

gorule-0000007

• total: 0

gorule-0000008

• total: 25

Messages

• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- RGD 3696 part_of GO:0005622 PMID:17868307 ECO:0000314 20200814 MGI model-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:5ee8120100003004
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- RGD 2517 involved_in GO:0006810 PMID:19755421 ECO:0006013 20240306 SynGO occurs_in(GO:0045202) contributor=https://orcid.org/0000-0002-5615-1014|noctua-model-id=gomodel:SYNGO_1628|model-state=production
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- RGD 2517 involved_in GO:0006810 PMID:19755421 ECO:0007719 20240306 SynGO occurs_in(GO:0045202),occurs_in(UBERON:0002240) contributor=https://orcid.org/0000-0002-5615-1014|noctua-model-id=gomodel:SYNGO_1628|model-state=production
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- RGD 2517 involved_in GO:0006810 PMID:19755421 ECO:0005589 20240306 SynGO occurs_in(GO:0045202) contributor=https://orcid.org/0000-0002-5615-1014|noctua-model-id=gomodel:SYNGO_1628|model-state=production
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- RGD 2517 involved_in GO:0006810 PMID:19755421 ECO:0000314 20240306 SynGO occurs_in(GO:0045202),occurs_in(UBERON:0002240) contributor=https://orcid.org/0000-0002-5615-1014|noctua-model-id=gomodel:SYNGO_1628|model-state=production
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- RGD 2517 involved_in GO:0006810 PMID:19755421 ECO:0006063 20240306 SynGO occurs_in(GO:0045202) contributor=https://orcid.org/0000-0002-5615-1014|noctua-model-id=gomodel:SYNGO_1628|model-state=production
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- RGD 2517 involved_in GO:0006810 PMID:19755421 ECO:0000314 20240306 SynGO occurs_in(GO:0045202) contributor=https://orcid.org/0000-0002-5615-1014|noctua-model-id=gomodel:SYNGO_1628|model-state=production
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- RGD 2517 involved_in GO:0006810 PMID:19755421 ECO:0006063 20240306 SynGO occurs_in(GO:0045202),occurs_in(UBERON:0002421) contributor=https://orcid.org/0000-0002-5615-1014|noctua-model-id=gomodel:SYNGO_1628|model-state=production
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- RGD 2517 involved_in GO:0006810 PMID:19755421 ECO:0000314 20240306 SynGO occurs_in(GO:0045202),occurs_in(UBERON:0002421) contributor=https://orcid.org/0000-0002-5615-1014|noctua-model-id=gomodel:SYNGO_1628|model-state=production
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- RGD 2517 involved_in GO:0006810 PMID:19755421 ECO:0006013 20240306 SynGO occurs_in(GO:0045202),occurs_in(UBERON:0002240) contributor=https://orcid.org/0000-0002-5615-1014|noctua-model-id=gomodel:SYNGO_1628|model-state=production
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- RGD 2517 involved_in GO:0006810 PMID:19755421 ECO:0006063 20240306 SynGO occurs_in(GO:0045202),occurs_in(UBERON:0000955) contributor=https://orcid.org/0000-0002-5615-1014|noctua-model-id=gomodel:SYNGO_1628|model-state=production
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- RGD 2517 involved_in GO:0006810 PMID:19755421 ECO:0006013 20240306 SynGO occurs_in(GO:0045202),occurs_in(UBERON:0000955) contributor=https://orcid.org/0000-0002-5615-1014|noctua-model-id=gomodel:SYNGO_1628|model-state=production
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- RGD 2517 involved_in GO:0006810 PMID:19755421 ECO:0006063 20240306 SynGO occurs_in(GO:0045202),occurs_in(UBERON:0002240) contributor=https://orcid.org/0000-0002-5615-1014|noctua-model-id=gomodel:SYNGO_1628|model-state=production
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- RGD 2517 involved_in GO:0006810 PMID:19755421 ECO:0005589 20240306 SynGO occurs_in(GO:0045202),occurs_in(UBERON:0002421) contributor=https://orcid.org/0000-0002-5615-1014|noctua-model-id=gomodel:SYNGO_1628|model-state=production
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- RGD 2517 involved_in GO:0006810 PMID:19755421 ECO:0000314 20240306 SynGO occurs_in(GO:0045202),occurs_in(UBERON:0000955) contributor=https://orcid.org/0000-0002-5615-1014|noctua-model-id=gomodel:SYNGO_1628|model-state=production
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- RGD 2517 involved_in GO:0006810 PMID:19755421 ECO:0006013 20240306 SynGO occurs_in(GO:0045202),occurs_in(UBERON:0002421) contributor=https://orcid.org/0000-0002-5615-1014|noctua-model-id=gomodel:SYNGO_1628|model-state=production
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- RGD 2517 involved_in GO:0006810 PMID:19755421 ECO:0007719 20240306 SynGO occurs_in(GO:0045202),occurs_in(UBERON:0000955) contributor=https://orcid.org/0000-0002-5615-1014|noctua-model-id=gomodel:SYNGO_1628|model-state=production
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- RGD 2517 involved_in GO:0006810 PMID:19755421 ECO:0007695 20240306 SynGO occurs_in(GO:0045202),occurs_in(UBERON:0000955) contributor=https://orcid.org/0000-0002-5615-1014|noctua-model-id=gomodel:SYNGO_1628|model-state=production
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- RGD 2517 involved_in GO:0006810 PMID:19755421 ECO:0007695 20240306 SynGO occurs_in(GO:0045202),occurs_in(UBERON:0002421) contributor=https://orcid.org/0000-0002-5615-1014|noctua-model-id=gomodel:SYNGO_1628|model-state=production
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- RGD 2517 involved_in GO:0006810 PMID:19755421 ECO:0007719 20240306 SynGO occurs_in(GO:0045202) contributor=https://orcid.org/0000-0002-5615-1014|noctua-model-id=gomodel:SYNGO_1628|model-state=production
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- RGD 2517 involved_in GO:0006810 PMID:19755421 ECO:0007695 20240306 SynGO occurs_in(GO:0045202) contributor=https://orcid.org/0000-0002-5615-1014|noctua-model-id=gomodel:SYNGO_1628|model-state=production
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- RGD 2517 involved_in GO:0006810 PMID:19755421 ECO:0005589 20240306 SynGO occurs_in(GO:0045202),occurs_in(UBERON:0002240) contributor=https://orcid.org/0000-0002-5615-1014|noctua-model-id=gomodel:SYNGO_1628|model-state=production
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- RGD 2517 involved_in GO:0006810 PMID:19755421 ECO:0007695 20240306 SynGO occurs_in(GO:0045202),occurs_in(UBERON:0002240) contributor=https://orcid.org/0000-0002-5615-1014|noctua-model-id=gomodel:SYNGO_1628|model-state=production
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- RGD 2517 involved_in GO:0006810 PMID:19755421 ECO:0007719 20240306 SynGO occurs_in(GO:0045202),occurs_in(UBERON:0002421) contributor=https://orcid.org/0000-0002-5615-1014|noctua-model-id=gomodel:SYNGO_1628|model-state=production
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- RGD 2517 involved_in GO:0006810 PMID:19755421 ECO:0005589 20240306 SynGO occurs_in(GO:0045202),occurs_in(UBERON:0000955) contributor=https://orcid.org/0000-0002-5615-1014|noctua-model-id=gomodel:SYNGO_1628|model-state=production

gorule-0000011

• total: 0

gorule-0000013

• total: 0

gorule-0000015

• total: 0

gorule-0000016

• total: 0

gorule-0000017

• total: 0

gorule-0000018

• total: 0

gorule-0000020

• total: 4

Messages

• ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0042135) -- RGD 69313 involved_in GO:0042135 PMID:26820598 ECO:0000005 20240306 SynGO occurs_in(GO:0031594) noctua-model-id=gomodel:SYNGO_2109|contributor=https://orcid.org/0000-0002-4973-5732|model-state=production|contributor=https://orcid.org/0000-0002-2514-0216|contributor=https://orcid.org/0000-0002-2286-1587
• ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0042136) -- RGD 2653 involved_in GO:0042136 PMID:8336154 ECO:0000005 20240306 SynGO noctua-model-id=gomodel:SYNGO_3124|contributor=https://orcid.org/0000-0003-0593-3443|model-state=production|contributor=https://orcid.org/0000-0002-2514-0216|contributor=https://orcid.org/0000-0002-2286-1587
• ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0042136) -- RGD 2653 involved_in GO:0042136 PMID:8336154 ECO:0007695 20240306 SynGO noctua-model-id=gomodel:SYNGO_3124|contributor=https://orcid.org/0000-0003-0593-3443|model-state=production|contributor=https://orcid.org/0000-0002-2514-0216|contributor=https://orcid.org/0000-0002-2286-1587
• ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0042136) -- RGD 2653 involved_in GO:0042136 PMID:8336154 ECO:0006063 20240306 SynGO noctua-model-id=gomodel:SYNGO_3124|contributor=https://orcid.org/0000-0003-0593-3443|model-state=production|contributor=https://orcid.org/0000-0002-2514-0216|contributor=https://orcid.org/0000-0002-2286-1587

gorule-0000022

• total: 0

gorule-0000026

• total: 1

Messages

• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources -- RGD 628688 enables GO:0003756 PAINT_REF:18929 ECO:0000318 PANTHER:PTN000432607 20180716 WB model-state=production|noctua-model-id=gomodel:5b318d0900000296|contributor=https://orcid.org/0000-0002-3013-9906

gorule-0000029

• total: 0

gorule-0000030

• total: 0

gorule-0000037

• total: 0

gorule-0000039

• total: 0

gorule-0000042

• total: 0

gorule-0000043

• total: 0

gorule-0000046

• total: 0

gorule-0000050

• total: 0

gorule-0000055

• total: 0

gorule-0000058

• total: 0

gorule-0000061

• total: 11

Messages

• WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- RGD 3696 part_of GO:0009986 PMID:15187084 ECO:0000314 20200813 MGI model-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:5ee8120100003004
• WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- RGD 3696 part_of GO:0045202 PMID:9409715 ECO:0000314 20200813 MGI model-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:5ee8120100003004
• WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- RGD 3696 part_of GO:0043025 PMID:9409715 ECO:0000314 20200813 MGI model-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:5ee8120100003004
• WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- RGD 3696 part_of GO:0031982 PMID:17868307 ECO:0000314 20200814 MGI model-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:5ee8120100003004
• WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- RGD 3696 part_of GO:0005768 PMID:17868307 ECO:0000314 20200814 MGI model-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:5ee8120100003004
• WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- RGD 3696 part_of GO:0005622 PMID:17868307 ECO:0000314 20200814 MGI model-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:5ee8120100003004
• WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- RGD 3696 part_of GO:0030425 PMID:9409715 ECO:0000314 20200813 MGI model-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:5ee8120100003004
• WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- RGD 3696 part_of GO:0005886 PMID:17868307 ECO:0000314 20200814 MGI model-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:5ee8120100003004
• WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- RGD 3697 part_of GO:0009986 PMID:15187084 ECO:0000314 20200813 MGI model-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:5ee8120100003004
• WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- RGD 3696 part_of GO:0009986 PMID:17868307 ECO:0000314 20200814 MGI model-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:5ee8120100003004
• WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- RGD 3696 part_of GO:0043679 PMID:9409715 ECO:0000314 20200813 MGI model-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:5ee8120100003004

gorule-0000063

• total: 0

gorule-0000064

• total: 0

other

• total: 0

No report generated.

No report generated.