Table of contents

Summary

GAF summary

Found 143517 annotations in 143550 lines.

GAF Validation Summary Errors are reported first.

For rule GO_AR:0000005 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000005) No ISS or ISS-related annotations to 'protein binding ; GO:0005515', there are 224 violations with type Error.

For rule GO_AR:0000011 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000011) ND annotations to root nodes only, there are 3 violations with type Error.

For rule GO_AR:0000014 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000014) Valid GO term ID, there are 8 violations with type Error.

For rule GO_AR:0000003 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000003) Annotations to 'binding ; GO:0005488' and 'protein binding ; GO:0005515' should be made with IPI and an interactor in the 'with' field, there are 224 violations with type Warning.

For rule GO_AR:0000008 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000008) No annotations should be made to uninformative high level terms, there are 292 violations with type Warning.

For rule GO_AR:0000011 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000011) ND annotations to root nodes only, there are 31400 violations with type Warning.

GAF Prediction Summary

Found 7645 predictions, see prediction file for details.

Used Ontology Summary

go/extensions/go-gaf    go/releases/2019-05-09/extensions/go-gaf.owl

Report

Group: jcvi - Dataset: jcvi

SUMMARY

This report generated on 2019-05-09

Header From Original Association File

!From: The J. Craig Venter Institute
!
!JCVI Gene Association File
!
!organism: Anaplasma phagocytophilum HZ (taxon:212042)
!organism: Bacillus anthracis Ames (taxon:198094)
!organism: Campylobacter jejuni RM1221(taxon:195099)
!organism: Carboxydothermus hydrogenoformans Z-2901(taxon:246194)
!organism: Clostridium perfringens ATCC13124 (taxon:195103)
!organism: Colwellia psychrerythraea 34H (taxon:167879)
!organism: Coxiella burnetii RSA 493 (taxon:227377)
!organism: Dehalococcoides ethenogenes 195 (taxon:243164)
!organism: Ehrlichia chaffeensis Arkansas (taxon:205920)
!organism: Geobacter sulfurreducens PCA (taxon:243231)
!organism: Hyphomonas neptunium ATCC 15444 (taxon:228405)
!organism: Listeria monocytogenes 4b F2365 (taxon:265669)
!organism: Methylococcus capsulatus Bath (taxon:243233)
!organism: Neorickettsia sennetsu Miyayama (taxon:222891)
!organism: Pseudomonas fluorescens Pf-5 (taxon:220664)
!organism: Pseudomonas syringae DC3000 (taxon:223283)
!organism: Pseudomonas syringae pv. phaseolicola 1448A (taxon:264730)
!organism: Shewanella oneidensis MR-1 (taxon:211586)
!organism: Silicibacter pomeroyi DSS-3 (taxon:246200)
!organism: Vibrio cholerae El Tor N16961 (taxon:686)
!

Contents

gorule-0000008

gorule-0000011

gorule-0000016

gorule-0000020

gorule-0000027

gorule-0000029

other

MESSAGES

gorule-0000008

No annotations should be made to uninformative high level terms

Messages