This report generated on 2024-06-18
!gaf-version: 2.2
!generated-by: JaponicusDB
!date-generated: 2024-06-18T03:57
!URL: https://www.japonicusdb.org
!contact: helpdesk@pombase.org
No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515'
IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to to 'protein binding ; GO:0005515 or GO:0005488 binding''
IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC
IPI should not be used with GO:0003824 catalytic activity or descendents
No annotations should be made to uninformative high level terms
JaponicusDB SJAG_00107 mmf1 involved_in GO:1901565 GO_REF:0000107 IEA PomBase:SPAC1039.10 P mitochondrial matrix protein, YjgF family protein Mmf1 protein taxon:4897 20240618 GO_CentralJaponicusDB SJAG_00107 mmf1 involved_in GO:1901565 GO_REF:0000107 IEA PomBase:SPBC2G2.04c P mitochondrial matrix protein, YjgF family protein Mmf1 protein taxon:4897 20240618 GO_CentralJaponicusDB SJAG_01283 atg4 involved_in GO:0051697 GO_REF:0000107 IEA PomBase:SPAC19B12.08 P Atg8 deconjugator Atg4 protein taxon:4897 20240618 GO_CentralJaponicusDB SJAG_03088 fim1 involved_in GO:1904530 GO_REF:0000107 IEA PomBase:SPBC1778.06c P fimbrin protein taxon:4897 20240618 PomBaseJaponicusDB SJAG_03199 cyt2 involved_in GO:0018063 GO_REF:0000107 IEA PomBase:SPAC24C9.02c P cytochrome c1 heme lyase Cyt2 protein taxon:4897 20240618 GO_CentralJaponicusDB SJAG_04008 cyc3 involved_in GO:0018063 GO_REF:0000107 IEA PomBase:SPBC26H8.12 P cytochrome c heme lyase Cyc3 protein taxon:4897 20240618 GO_CentralJaponicusDB SJAG_04223 coq10 enables GO:0140104 GO_REF:0000107 IEA PomBase:SPCC16A11.07 F mitochondrial ubiquinone binding protein Coq10 protein taxon:4897 20240618 PomBaseJaponicusDB SJAG_04887 cdc8 involved_in GO:1904530 GO_REF:0000107 IEA PomBase:SPAC27F1.02c P tropomyosin protein taxon:4897 20240618 PomBaseJaponicusDB SJAG_04887 cdc8 enables GO:0098772 GO_REF:0000107 IEA PomBase:SPAC27F1.02c F tropomyosin protein taxon:4897 20240618 PomBaseJaponicusDB SJAG_06309 atg12 involved_in GO:0061739 GO_REF:0000107 IEA PomBase:SPAC1783.06c P autophagy associated ubiquitin-like protein modifier Atg12 protein taxon:4897 20240618 GO_CentralND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
Taxon-appropriate annotation check
JaponicusDB SJAG_00409 gpd1 enables GO:0047952 GO_REF:0000107 IEA PomBase:SPBC215.05 F glycerol-3-phosphate dehydrogenase Gpd1 protein taxon:4897 20240618 PomBaseJaponicusDB SJAG_01012 gpd2 enables GO:0047952 GO_REF:0000107 IEA PomBase:SPAC23D3.04c F glycerol-3-phosphate dehydrogenase Gpd2 protein taxon:4897 20240618 PomBaseJaponicusDB SJAG_02467 dph5 enables GO:0004164 GO_REF:0000107 IEA PomBase:SPCC576.14 F diphthine synthase Dph5 protein taxon:4897 20240618 InterProDual species taxon check
With/From: IC annotations require a With/From GO ID
IDA annotations must not have a With/From entry
IPI annotations require a With/From entry
Automatic repair of annotations to merged or obsoleted terms
JaponicusDB SJAG_00260 sdh2 part_of GO:0005749 GO_REF:0000107 IEA PomBase:SPAC140.01 C succinate dehydrogenase (ubiquinone) iron-sulfur protein subunit protein taxon:4897 20240618 ComplexPortalJaponicusDB SJAG_01671 sdh1 part_of GO:0005749 GO_REF:0000107 IEA PomBase:SPAC1556.02c C succinate dehydrogenase Sdh1 protein taxon:4897 20240618 GO_CentralJaponicusDB SJAG_02398 tim18 part_of GO:0005749 GO_REF:0000107 IEA PomBase:SPBP23A10.16 C TIM22 inner membrane protein import complex and succinate dehydrogenase (SDH) anchor subunit Tim18 protein taxon:4897 20240618 GO_CentralJaponicusDB SJAG_03920 sdh3 part_of GO:0005749 GO_REF:0000107 IEA PomBase:SPCC330.12c C succinate dehydrogenase (ubiquinone) cytochrome b subunit protein taxon:4897 20240618 GO_CentralGO aspect should match the term's namespace; otherwise it is repaired to the appropriate aspect
IEAs should be less than one year old.
Obsolete GO_REFs are not allowed
IBA annotations should ONLY be assigned_by GO_Central and have GO_REF:0000033 as a reference
Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants
Qualifier: IKR evidence code requires a NOT qualifier
Check for valid combination of evidence code and GO_REF
The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.
Annotations to ISS, ISA and ISO should not be self-referential
References should have only one ID per ID space
Object extensions should conform to the extensions-patterns.yaml file in metadata
Allowed gene product to term relations (gp2term)
Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)
TreeGrafter IEAs should be filtered for GO reference species