This report generated on 2024-04-19
!gaf-version: 2.2
!generated-by: JaponicusDB
!date-generated: 2024-04-18T03:56
!URL: https://www.japonicusdb.org
!contact: helpdesk@pombase.org
No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515'
IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to to 'protein binding ; GO:0005515 or GO:0005488 binding''
IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC
IPI should not be used with GO:0003824 catalytic activity or descendents
No annotations should be made to uninformative high level terms
JaponicusDB SJAG_00107 mmf1 involved_in GO:1901565 GO_REF:0000107 IEA PomBase:SPAC1039.10 P mitochondrial matrix protein, YjgF family protein Mmf1 protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_00107 mmf1 involved_in GO:1901565 GO_REF:0000107 IEA PomBase:SPBC2G2.04c P mitochondrial matrix protein, YjgF family protein Mmf1 protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_00114 pik3 involved_in GO:0030242 GO_REF:0000107 IEA PomBase:SPAC458.05 P phosphatidylinositol 3-kinase Pik3 protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_00115 atg1803 involved_in GO:0000422 GO_REF:0000107 IEA PomBase:SPAC458.06 P autophagy associated WD repeat protein Atg18c protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_00115 atg1803 involved_in GO:0030242 GO_REF:0000107 IEA PomBase:SPAC458.06 P autophagy associated WD repeat protein Atg18c protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_00323 rrp16 involved_in GO:0000027 GO_REF:0000107 IEA PomBase:SPAC22F8.09 P rRNA processing protein Rrp16 protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_00645 atg7 involved_in GO:0000422 GO_REF:0000107 IEA PomBase:SPBC6B1.05c P E1 Atg8 and Atg12 E1 activating enzyme Atg7 protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_00841 rex4 involved_in GO:0000027 GO_REF:0000107 IEA PomBase:SPBC1604.09c P exoribonuclease Rex4 protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_01283 atg4 involved_in GO:0051697 GO_REF:0000107 IEA PomBase:SPAC19B12.08 P Atg8 deconjugator Atg4 protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_01505 mug86 involved_in GO:0071705 GO_REF:0000107 IEA PomBase:SPAC5D6.09c P plasma membrane acetate transmembrane transporter protein taxon:4897 20240418 UniProt
JaponicusDB SJAG_01561 atg3 involved_in GO:0000422 GO_REF:0000107 IEA PomBase:SPBC3B9.06c P autophagy associated protein Atg3 protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_01568 rpl5a involved_in GO:0000027 GO_REF:0000107 IEA PomBase:SPAC3H5.12c P 60S ribosomal protein L5 protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_01568 rpl5a involved_in GO:0000027 GO_REF:0000107 IEA PomBase:SPBC11C11.09c P 60S ribosomal protein L5 protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_01783 atg1801 involved_in GO:0000422 GO_REF:0000107 IEA PomBase:SPAC589.07c P autophagy associated WD repeat protein Atg18a protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_01783 atg1801 involved_in GO:0030242 GO_REF:0000107 IEA PomBase:SPAC589.07c P autophagy associated WD repeat protein Atg18a protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_01858 mnl1 involved_in GO:1904380 GO_REF:0000107 IEA PomBase:SPAC23A1.04c P alpha mannosidase Mnl1 protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_02007 etr1 enables GO:0016631 GO_REF:0000107 IEA PomBase:SPAC26F1.04c F enoyl-[acyl-carrier protein] reductase protein taxon:4897 20240418 PomBase
JaponicusDB SJAG_02414 atg8 involved_in GO:0000422 GO_REF:0000107 IEA PomBase:SPBP8B7.24c P autophagy associated protein Atg8 protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_02717 tsc13 enables GO:0016631 GO_REF:0000107 IEA PomBase:SPBC646.07c F enoyl-[acyl-carrier-protein] reductase protein taxon:4897 20240418 PomBase
JaponicusDB SJAG_02754 rsa4 involved_in GO:0000027 GO_REF:0000107 IEA PomBase:SPCC18.05c P notchless-like ribosome biogenesis protein Rsa4 protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_03058 SJAG_03058 involved_in GO:0016043 GO_REF:0000117 IEA ARBA:ARBA00028911 P actin-like protein protein taxon:4897 20240129 UniProt
JaponicusDB SJAG_03088 fim1 involved_in GO:1904530 GO_REF:0000107 IEA PomBase:SPBC1778.06c P fimbrin protein taxon:4897 20240418 PomBase
JaponicusDB SJAG_03100 atg9 involved_in GO:0000422 GO_REF:0000107 IEA PomBase:SPBC15D4.07c P autophagy associated phospholipid scramblase Atg9 protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_03199 cyt2 involved_in GO:0018063 GO_REF:0000107 IEA PomBase:SPAC24C9.02c P cytochrome c1 heme lyase Cyt2 protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_03464 fis1 involved_in GO:0000422 GO_REF:0000107 IEA PomBase:SPBC11G11.01 P mitochondrial outer membrane fission complex receptor Fis1 protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_03496 mdn1 involved_in GO:0000027 GO_REF:0000107 IEA PomBase:SPCC737.08 P rixosome complex midasin subunit Mdn1 protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_03666 rpl6 involved_in GO:0000027 GO_REF:0000107 IEA PomBase:SPCC622.18 P 60S ribosomal protein L6 protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_03851 atg2 involved_in GO:0000422 GO_REF:0000107 IEA PomBase:SPBC31E1.01c P autophagy associated intermembrane lipid transfer protein Atg2 protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_03851 atg2 involved_in GO:0030242 GO_REF:0000107 IEA PomBase:SPBC31E1.01c P autophagy associated intermembrane lipid transfer protein Atg2 protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_03862 fxn1 involved_in GO:0018283 GO_REF:0000107 IEA PomBase:SPCC1183.03c P mitochondrial [2Fe-2S] cluster assembly frataxin Fxn1 protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_04008 cyc3 involved_in GO:0018063 GO_REF:0000107 IEA PomBase:SPBC26H8.12 P cytochrome c heme lyase Cyc3 protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_04066 rpl5b involved_in GO:0000027 GO_REF:0000107 IEA PomBase:SPAC3H5.12c P 60S ribosomal protein L5 protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_04066 rpl5b involved_in GO:0000027 GO_REF:0000107 IEA PomBase:SPBC11C11.09c P 60S ribosomal protein L5 protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_04176 rpl10 involved_in GO:0000027 GO_REF:0000107 IEA PomBase:SPAP7G5.05 P 60S ribosomal protein L10 protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_04176 rpl10 involved_in GO:0000027 GO_REF:0000107 IEA PomBase:SPBC18E5.04 P 60S ribosomal protein L10 protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_04502 atg11 involved_in GO:0030242 GO_REF:0000107 IEA PomBase:SPAC7D4.04 P autophagy associated protein kinase regulator Atg11 protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_04552 vps15 involved_in GO:0030242 GO_REF:0000107 IEA PomBase:SPBC119.07 P serine/threonine protein kinase Vps15 protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_04759 fun14 involved_in GO:0000422 GO_REF:0000107 IEA PomBase:SPAC29A4.17c P integral mitochondrial outer membrane (MOM) protein protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_04843 fum1 part_of GO:0045239 GO_REF:0000107 IEA PomBase:SPCC18.18c C fumarate hydratase protein taxon:4897 20240418 InterPro
JaponicusDB SJAG_04847 rpp0 involved_in GO:0000027 GO_REF:0000107 IEA PomBase:SPCC18.14c P 60S acidic ribosomal protein Rpp0 protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_04887 cdc8 involved_in GO:1904530 GO_REF:0000107 IEA PomBase:SPAC27F1.02c P tropomyosin protein taxon:4897 20240418 PomBase
JaponicusDB SJAG_04887 cdc8 enables GO:0098772 GO_REF:0000107 IEA PomBase:SPAC27F1.02c F tropomyosin protein taxon:4897 20240418 PomBase
JaponicusDB SJAG_04963 atg1802 involved_in GO:0000422 GO_REF:0000107 IEA PomBase:SPAC823.16c P autophagy associated WD repeat protein Atg18b protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_04963 atg1802 involved_in GO:0030242 GO_REF:0000107 IEA PomBase:SPAC823.16c P autophagy associated WD repeat protein Atg18b protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_05017 atg17 involved_in GO:0030242 GO_REF:0000107 IEA PomBase:SPAC10F6.11c P autophagy associated protein kinase activator Atg17 protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_06309 atg12 involved_in GO:0000422 GO_REF:0000107 IEA PomBase:SPAC1783.06c P autophagy associated ubiquitin-like protein modifier Atg12 protein taxon:4897 20240418 GO_Central
JaponicusDB SJAG_06309 atg12 involved_in GO:0061739 GO_REF:0000107 IEA PomBase:SPAC1783.06c P autophagy associated ubiquitin-like protein modifier Atg12 protein taxon:4897 20240418 GO_Central
ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
Taxon-appropriate annotation check
JaponicusDB SJAG_00409 gpd1 enables GO:0047952 GO_REF:0000107 IEA PomBase:SPBC215.05 F glycerol-3-phosphate dehydrogenase Gpd1 protein taxon:4897 20240418 PomBase
JaponicusDB SJAG_01012 gpd2 enables GO:0047952 GO_REF:0000107 IEA PomBase:SPAC23D3.04c F glycerol-3-phosphate dehydrogenase Gpd2 protein taxon:4897 20240418 PomBase
JaponicusDB SJAG_01063 arh1 enables GO:0015039 GO_REF:0000107 IEA PomBase:SPBC3B8.01c F mitochondrial [2Fe-2S] cluster assembly NADPH-ferredoxin reductase Arh1 protein taxon:4897 20240418 RHEA
JaponicusDB SJAG_02496 dao1 is_active_in GO:0030670 GO_REF:0000107 IEA PomBase:SPCC1450.07c C D-amino acid oxidase protein taxon:4897 20240418 UniProt
Dual species taxon check
With/From: IC annotations require a With/From GO ID
IDA annotations must not have a With/From entry
IPI annotations require a With/From entry
Automatic repair of annotations to merged or obsoleted terms
JaponicusDB SJAG_00355 osh3 involved_in GO:0015918 GO_REF:0000108 IEA GO:0015248 P sterol transfer protein Osh3 protein taxon:4897 20240131 GOC
JaponicusDB SJAG_01590 osh41 involved_in GO:0015918 GO_REF:0000108 IEA GO:0015248 P sterol transfer protein Osh41 protein taxon:4897 20240131 GOC
JaponicusDB SJAG_01722 osh2 involved_in GO:0015918 GO_REF:0000108 IEA GO:0015248 P sterol transfer protein Osh2 protein taxon:4897 20240131 GOC
JaponicusDB SJAG_02323 osh42 involved_in GO:0015918 GO_REF:0000108 IEA GO:0015248 P sterol transfer protein Osh42 protein taxon:4897 20240131 GOC
JaponicusDB SJAG_02375 oss1 involved_in GO:0015918 GO_REF:0000108 IEA GO:0015248 P sterol transfer protein Oss1 protein taxon:4897 20240131 GOC
JaponicusDB SJAG_03718 osh6 involved_in GO:0015918 GO_REF:0000108 IEA GO:0015248 P sterol transfer protein Osh6 protein taxon:4897 20240131 GOC
JaponicusDB SJAG_00233 spx2 involved_in GO:0035435 GO_REF:0000108 IEA GO:0015114 P SPX/EXS domain protein Spx2 protein taxon:4897 20240131 GOC
GO aspect should match the term's namespace; otherwise it is repaired to the appropriate aspect
IEAs should be less than one year old.
Obsolete GO_REFs are not allowed
IBA annotations should ONLY be assigned_by GO_Central and have GO_REF:0000033 as a reference
Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants
Qualifier: IKR evidence code requires a NOT qualifier
Check for valid combination of evidence code and GO_REF
The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.
Annotations to ISS, ISA and ISO should not be self-referential
References should have only one ID per ID space
Object extensions should conform to the extensions-patterns.yaml file in metadata
Allowed gene product to term relations (gp2term)
Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)
TreeGrafter IEAs should be filtered for GO reference species