GAF Parser Summary
There are 10 GAF parser warnings.
GAF summary
Found 1147 annotations in 1159 lines.
GAF Validation Summary
Errors are reported first.
For rule GO_AR:0000007 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000007)
IPI should not be used with catalytic activity molecular function terms, there is one violation with type Warning.
For rule GO_AR:0000008 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000008)
No annotations should be made to uninformative high level terms, there are 7 violations with type Warning.
GAF Prediction Summary
Found 79 predictions, see prediction file for details.
Used Ontology Summary
go/extensions/go-gaf go/releases/2019-10-31/extensions/go-gaf.owl
Group: gonuts - Dataset: gonuts
SUMMARY
This report generated on 2019-11-02
- Associations: 1147
- Lines in file (incl headers): 1169
- Lines skipped: 18
!Project_name: Gene Ontology Normal Usage Tracking System (GONUTS)
!URL: http://gowiki.tamu.edu
!Contact Email: ecoliwiki@gmail.com
!Funding: NIGMS U24GM088849
Contents
gorule-0000002
gorule-0000006
gorule-0000007
gorule-0000008
gorule-0000011
gorule-0000013
gorule-0000015
gorule-0000016
gorule-0000017
gorule-0000018
gorule-0000020
gorule-0000027
gorule-0000028
gorule-0000029
gorule-0000030
gorule-0000033
gorule-0000037
gorule-0000039
gorule-0000042
gorule-0000043
gorule-0000046
gorule-0000050
other
MESSAGES
gorule-0000002
No 'NOT' annotations to 'protein binding ; GO:0005515'
gorule-0000006
IEP and HEP usage is restricted to terms from the Biological Process ontology
gorule-0000007
IPI should not be used with catalytic activity molecular function terms
Messages
- WARNING - Violates GO Rule: GORULE:0000007: IPI should not be used with catalytic activity molecular function terms --
UniProtKB Q9DBH0 Wwp2 GO:0004842 PMID:15047715 IPI UniProtKB:P20263 F protein taxon:10090 20101213 GONUTS
gorule-0000008
No annotations should be made to uninformative high level terms
Messages
- WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms --
UniProtKB P37409 btuB GO:0005215 PMID:1448622 IMP F protein taxon:90371 20110414 GONUTS
- WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms --
UniProtKB P0A261 tsx GO:0006810 PMID:9043137 IMP P protein taxon:90371 20110414 GONUTS
- WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms --
UniProtKB Q38845 PP2AA1 GO:0006950 PMID:18162590 IMP P protein taxon:3702 20101021 GONUTS
- WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms --
UniProtKB P36581 cal1 NOT GO:0040007 PMID:19351719 IMP P protein taxon:284812 20101123 GONUTS
- WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms --
UniProtKB P0A6A3 ackA GO:0042710 PMID:12753190 IMP P protein taxon:83333 20110923 GONUTS
- WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms --
UniProtKB P0ACA3 sspA GO:0001101 PMID:15819627 IMP P protein taxon:83333 20110412 GONUTS
- WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms --
UniProtKB P76085 paaK GO:0008152 PMID:9748275 IMP P protein taxon:83333 20110412 GONUTS
gorule-0000011
ND annotations to root nodes only; and only root nodes can have the evidence code ND.
gorule-0000013
Taxon-appropriate annotation check
gorule-0000015
Dual species taxon check
gorule-0000016
With/From: IC annotations require a With/From GO ID
Messages
- ERROR - Violates GO Rule: GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column --
UniProtKB P0A295 rho NOT GO:0033178 PMID:21045542 IC PMID:12213656 C protein taxon:90371 20110802 GONUTS
gorule-0000017
IDA annotations must not have a With/From entry
gorule-0000018
IPI annotations require a With/From entry
Messages
- WARNING - Violates GO Rule: GORULE:0000018: IPI annotations require a With/From entry --
UniProtKB P0AE67 cheY GO:0006935 PMID:11295559 IPI P protein taxon:83333 20110309 GONUTS
- WARNING - Violates GO Rule: GORULE:0000018: IPI annotations require a With/From entry --
UniProtKB P07330 cheB GO:0006935 PMID:11295559 IPI P protein taxon:83333 20110309 GONUTS
- WARNING - Violates GO Rule: GORULE:0000018: IPI annotations require a With/From entry --
UniProtKB Q7XA07 D1BLIC GO:0030990 PMID:16527740 IPI C protein taxon:3055 20110114 GONUTS
- WARNING - Violates GO Rule: GORULE:0000018: IPI annotations require a With/From entry --
UniProtKB Q5DM57 IFT172 GO:0030992 PMID:16527740 IPI C protein taxon:3055 20110114 GONUTS
gorule-0000020
Automatic repair of annotations to merged or obsoleted terms
Messages
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0035413) --
UniProtKB P56704 WNT3A GO:0035413 PMID:20723538 IDA P protein taxon:9606 20101214 GONUTS
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0035083) --
UniProtKB Q1LV15 wdr69 GO:0035083 PMID:20568242 IMP P protein taxon:7955 20100924 GONUTS
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0022838) --
UniProtKB P0A261 tsx GO:0022838 PMID:9043137 IMP F protein taxon:90371 20110414 GONUTS
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005932) --
UniProtKB Q8TAM1 BBS10 GO:0005932 PMID:19190184 IDA C protein taxon:9606 20101130 GONUTS
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0042384) --
UniProtKB Q8TAM1 BBS10 GO:0042384 PMID:19190184 IMP P protein taxon:9606 20100926 GONUTS
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005932) --
UniProtKB Q6ZW61 BBS12 GO:0005932 PMID:19190184 IDA C protein taxon:9606 20101130 GONUTS
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0042384) --
UniProtKB Q6ZW61 BBS12 GO:0042384 PMID:19190184 IMP P protein taxon:9606 20101010 GONUTS
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0043234) --
UniProtKB P07013 priB GO:0043234 PMID:8663104 IPI UniProtKB:P0AEF0|UniProtKB:P0A8J2|UniProtKB:P0ACB0|UniProtKB:P17888 C protein taxon:83333 20101107 GONUTS
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006916) --
UniProtKB Q02858 Tek GO:0006916 PMID:16219799 IMP P protein taxon:10090 20101025 GONUTS
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006916) --
UniProtKB O30916 sopB GO:0006916 PMID:15642738 IMP P protein taxon:90371 20110414 GONUTS
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0042787) --
UniProtKB P51965 UBE2E1 GO:0042787 PMID:18439907 IMP P protein taxon:9606 20101124 GONUTS
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0043234) --
UniProtKB P0A8J2 dnaT GO:0043234 PMID:8663104 IPI UniProtKB:P0AEF0|UniProtKB:P07013|UniProtKB:P0ACB0|UniProtKB:P17888 C protein taxon:83333 20101105 GONUTS
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0043234) --
UniProtKB P17888 priA GO:0043234 PMID:8663104 IPI UniProtKB:P0AEF0|UniProtKB:P07013|UniProtKB:P0A8J2|UniProtKB:P0ACB0 C protein taxon:83333 20101105 GONUTS
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0032863) --
UniProtKB Q99LJ8 Nus1 GO:0032863 PMID:19805174 IMP P protein taxon:10090 20101107 GONUTS
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006916) --
UniProtKB Q3TCH7 Cul4a GO:0006916 PMID:18339895 IMP P protein taxon:10090 20101107 GONUTS
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0043234) --
UniProtKB P0ACB0 dnaB GO:0043234 PMID:8663104 IPI UniProtKB:P0AEF0|UniProtKB:P07013|UniProtKB:P0A8J2|UniProtKB:P17888 C protein taxon:83333 20101107 GONUTS
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0043234) --
UniProtKB P0AEF0 dnaC GO:0043234 PMID:8663104 IPI UniProtKB:P0ACB0|UniProtKB:P07013|UniProtKB:P0A8J2|UniProtKB:P17888 C protein taxon:83333 20101107 GONUTS
- WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0033159) --
UniProtKB Q13526 PIN1 GO:0033159 PMID:20675384 IMP P protein taxon:9606 20101203 GONUTS
- WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0003706) --
UniProtKB P55055 NR1H2 GO:0003706 PMID:11090131 IDA F protein taxon:9606 20110115 GONUTS
- WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0035121) --
UniProtKB P22607 FGFR3 GO:0035121 PMID:20582225 IMP P protein taxon:9606 20101212 GONUTS
- WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0003706) --
UniProtKB Q13133 NR1H3 GO:0003706 PMID:11090131 IDA F protein taxon:9606 20110115 GONUTS
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0043088) --
UniProtKB O14907 TAX1BP3 GO:0043088 PMID:21139582 IDA P protein taxon:9606 20101215 GONUTS
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0035413) --
UniProtKB P97299 Sfrp2 GO:0035413 PMID:20723538 IDA P protein taxon:10090 20101214 GONUTS
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0043088) --
UniProtKB P03126 E6 GO:0043088 PMID:21139582 IDA P protein taxon:333760 20101215 GONUTS
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001105) --
UniProtKB P70662 Ldb1 GO:0001105 PMID:20570862 IMP F protein taxon:10090 20101215 GONUTS
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004003) --
UniProtKB P04014 E1 GO:0004003 PMID:19008854 IDA F protein taxon:10580 20101217 GONUTS
- WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0019861) --
UniProtKB P46869 FLA10 GO:0019861 PMID:16527740 IDA C protein taxon:3055 20110114 GONUTS
- WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0019861) --
UniProtKB Q9SMH5 DHC1B GO:0019861 PMID:16527740 IDA C protein taxon:3055 20110114 GONUTS
- WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0019861) --
UniProtKB Q7XA07 D1BLIC GO:0019861 PMID:16527740 IDA C protein taxon:3055 20110119 GONUTS
- WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0008634) --
UniProtKB O95238 SPDEF GO:0008634 PMID:21229552 IDA P protein taxon:9606 20110116 GONUTS
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0090004) --
UniProtKB P0C605 Prkg1 GO:0090004 PMID:19127022 IDA P protein taxon:10090 20110120 GONUTS
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0042511) --
UniProtKB P17777 Lif GO:0042511 PMID:20624457 IDA P protein taxon:10116 20110116 GONUTS
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0042517) --
UniProtKB P17777 Lif GO:0042517 PMID:20624457 IDA P protein taxon:10116 20110116 GONUTS
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0042511) --
UniProtKB P01581 Ifng GO:0042511 PMID:20624457 IDA P protein taxon:10116 20110116 GONUTS
- WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0033159) --
UniProtKB Q08857 Cd36 GO:0033159 PMID:20978343 IMP P protein taxon:10090 20110116 GONUTS
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0032403) --
UniProtKB Q6IMN6 CAPRIN2 GO:0032403 PMID:18762581 IPI UniProtKB:O75197|UniProtKB:O15169 F protein taxon:9606 20110121 GONUTS
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0070215) --
UniProtKB P02340 Tp53 GO:0070215 PMID:20818388 IPI UniProtKB:P23804 F protein taxon:10090 20110121 GONUTS
- WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:2000154) --
UniProtKB P0A6X7 ihfA NOT GO:2000154 PMID:12686630 IMP P protein taxon:83333 20110415 GONUTS
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006916) --
UniProtKB Q96JZ2 HSH2D GO:0006916 PMID:15569688 IDA P protein taxon:9606 20110402 GONUTS
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0031513) --
UniProtKB Q9HBA0 TRPV4 GO:0031513 PMID:18024594 IDA C protein taxon:9606 20110601 GONUTS
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0033216) --
UniProtKB P72827 futA1 GO:0033216 PMID:11522907 IDA P protein taxon:1148 20110413 GONUTS
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0032862) --
UniProtKB O52623 sopE GO:0032862 PMID:9630225 IDA P protein taxon:90371 20110411 GONUTS
- WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0006184) --
UniProtKB Q53770 tetM GO:0006184 PMID:7826010 EXP P protein taxon:1280 20110416 GONUTS
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0030529) --
UniProtKB Q9M5P4 CRS2 GO:0030529 PMID:11179231 IDA C protein taxon:4577 20110416 GONUTS
- WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0045885) --
UniProtKB P49450 CENPA GO:0045885 PMID:21423629 IMP P protein taxon:9606 20110417 GONUTS
gorule-0000027
Each identifier in GAF is valid
Messages
- ERROR - Invalid identifier: GORULE:0000027: contains non letter, non number character, or spaces (PMID:16166540[2]) --
UniProtKB P69411 rcsF GO:0035556 PMID:16166540[2] EXP P protein taxon:83333 20110313 GONUTS
gorule-0000028
Aspect can only be one of C, P, F and should be repaired using the GO term
gorule-0000029
All IEAs over a year old are removed
Messages
- ERROR - Violates GO Rule: GORULE:0000029: All IEAs over a year old are removed --
UniProtKB P29430 pedA GO:0042742 GO_REF:0000004 IEA SP_KW:KW-0044 P protein taxon:1254 20110217 GONUTS
- ERROR - Violates GO Rule: GORULE:0000029: All IEAs over a year old are removed --
UniProtKB Q9QWR8 Naga GO:0008456 GO_REF:0000003 IEA EC:3.2.1.49 F protein taxon:10090 20110330 GONUTS
- ERROR - Violates GO Rule: GORULE:0000029: All IEAs over a year old are removed --
UniProtKB P0ACS2 soxR GO:0006979 GO_REF:0000002 IEA InterPro:IPR010211 P protein taxon:83333 20110417 GONUTS
- ERROR - Violates GO Rule: GORULE:0000029: All IEAs over a year old are removed --
UniProtKB Q08638 bglA GO:0000272 GO_REF:0000004 IEA SP_KW:KW-0624 P protein taxon:2336 20110417 GONUTS
gorule-0000030
Deprecated GO_REFs are not allowed
gorule-0000033
Public Reference IDs (PMID, PMC, doi, or GO_REF) should be preferred over group specific Reference IDs
Messages
- WARNING - Invalid identifier prefix: References should only be from ID prefixes PMID, PMD, doi, or GO_REF (EcoCyc:EG10028) --
UniProtKB P0A9N4 pflA GO:0016491 EcoCyc:EG10028 IDA F protein taxon:83333 20110417 GONUTS
- WARNING - Invalid identifier prefix: References should only be from ID prefixes PMID, PMD, doi, or GO_REF (EcoCyc:G7498) --
UniProtKB Q46812 ssnA GO:0016810 EcoCyc:G7498 IDA F protein taxon:83333 20110417 GONUTS
gorule-0000037
IBA annotations should ONLY be assigned_by GO_Central and have PMID:21873635 as a reference
gorule-0000039
Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants
gorule-0000042
Qualifier: IKR evidence code requires a NOT qualifier
gorule-0000043
Check for valid combination of evidence code and GO_REF
gorule-0000046
The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms.
Messages
- WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms --
UniProtKB O94813 SLIT2 GO:0042803 PMID:19498462 IDA F protein taxon:9606 20100222 GONUTS
gorule-0000050
Annotations to ISS, ISA and ISO should not be self-referential
other
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity ISS
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0004673 protein histidine kinase activity IMP
GO:0006412 translation AnnotationPropagation P GO:0003746 translation elongation factor activity IDA
GO:0006414 translational elongation AnnotationPropagation P GO:0003746 translation elongation factor activity IDA
GO:0006417 regulation of translation AnnotationPropagation P GO:0003746 translation elongation factor activity IDA
GO:0005623 cell AnnotationPropagation C GO:0035356 cellular triglyceride homeostasis IMP
GO:0006479 protein methylation AnnotationPropagation P GO:0008276 protein methyltransferase activity IMP
GO:0000165 MAPK cascade AnnotationPropagation P GO:0004709 MAP kinase kinase kinase activity IDA
GO:0000186 activation of MAPKK activity AnnotationPropagation P GO:0004709 MAP kinase kinase kinase activity IDA
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0004520 endodeoxyribonuclease activity IDA
GO:0090305 nucleic acid phosphodiester bond hydrolysis AnnotationPropagation P GO:0004520 endodeoxyribonuclease activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008940 nitrate reductase activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008942 nitrite reductase [NAD(P)H] activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008940 nitrate reductase activity IGI
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0003872 6-phosphofructokinase activity IMP
GO:0061615 glycolytic process through fructose-6-phosphate AnnotationPropagation P GO:0003872 6-phosphofructokinase activity IMP
GO:0006508 proteolysis AnnotationPropagation P GO:0004175 endopeptidase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0016491 oxidoreductase activity IMP
GO:0032508 DNA duplex unwinding AnnotationPropagation P GO:0003678 DNA helicase activity IDA
GO:0016310 phosphorylation AnnotationPropagation P GO:0016301 kinase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008863 formate dehydrogenase (NAD+) activity IGI
GO:1901998 toxin transport AnnotationPropagation P GO:0019534 toxin transmembrane transporter activity IMP
GO:0055085 transmembrane transport AnnotationPropagation P GO:0019534 toxin transmembrane transporter activity IMP
GO:0006508 proteolysis AnnotationPropagation P GO:0008237 metallopeptidase activity IDA
GO:0071897 DNA biosynthetic process AnnotationPropagation P GO:0003887 DNA-directed DNA polymerase activity IDA
GO:0097339 glycolate transmembrane transport AnnotationPropagation P GO:0043879 glycolate transmembrane transporter activity IGI
GO:0006412 translation AnnotationPropagation P GO:0003746 translation elongation factor activity IMP
GO:0006414 translational elongation AnnotationPropagation P GO:0003746 translation elongation factor activity IMP
GO:0006417 regulation of translation AnnotationPropagation P GO:0003746 translation elongation factor activity IMP
GO:0098793 presynapse AnnotationPropagation C GO:0051583 dopamine uptake involved in synaptic transmission IMP
GO:0005929 cilium AnnotationPropagation C GO:0042073 intraciliary transport IDA
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0004673 protein histidine kinase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004497 monooxygenase activity EXP
GO:0022900 electron transport chain AnnotationPropagation P GO:0009055 electron transfer activity IMP
GO:0006470 protein dephosphorylation AnnotationPropagation P GO:0008138 protein tyrosine/serine/threonine phosphatase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0016491 oxidoreductase activity IDA
GO:0015904 tetracycline transmembrane transport AnnotationPropagation P GO:0008493 tetracycline transmembrane transporter activity ISS
GO:0006508 proteolysis AnnotationPropagation P GO:0008235 metalloexopeptidase activity IDA
GO:0018108 peptidyl-tyrosine phosphorylation AnnotationPropagation P GO:0005006 epidermal growth factor-activated receptor activity IMP
GO:0007173 epidermal growth factor receptor signaling pathway AnnotationPropagation P GO:0005006 epidermal growth factor-activated receptor activity IMP
GO:0006412 translation AnnotationPropagation P GO:0003746 translation elongation factor activity ISA
GO:0006414 translational elongation AnnotationPropagation P GO:0003746 translation elongation factor activity ISA
GO:0006417 regulation of translation AnnotationPropagation P GO:0003746 translation elongation factor activity ISA
GO:0097339 glycolate transmembrane transport AnnotationPropagation P GO:0043879 glycolate transmembrane transporter activity IGI
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0004340 glucokinase activity IDA
GO:0051156 glucose 6-phosphate metabolic process AnnotationPropagation P GO:0004340 glucokinase activity IDA
GO:0016310 phosphorylation AnnotationPropagation P GO:0004797 thymidine kinase activity IMP
GO:0009165 nucleotide biosynthetic process AnnotationPropagation P GO:0004797 thymidine kinase activity IMP
GO:0009157 deoxyribonucleoside monophosphate biosynthetic process AnnotationPropagation P GO:0004797 thymidine kinase activity IMP
GO:0001172 transcription, RNA-templated AnnotationPropagation P GO:0003968 RNA-directed 5'-3' RNA polymerase activity IGI
GO:0016310 phosphorylation AnnotationPropagation P GO:0016301 kinase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IMP
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity IDA
GO:0016310 phosphorylation AnnotationPropagation P GO:0016301 kinase activity ISM
GO:1903506 regulation of nucleic acid-templated transcription AnnotationPropagation P GO:0003712 transcription coregulator activity IMP
GO:0005623 cell AnnotationPropagation C GO:0035356 cellular triglyceride homeostasis IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004450 isocitrate dehydrogenase (NADP+) activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008137 NADH dehydrogenase (ubiquinone) activity ISS
GO:0006412 translation AnnotationPropagation P GO:0003746 translation elongation factor activity ISA
GO:0006414 translational elongation AnnotationPropagation P GO:0003746 translation elongation factor activity ISA
GO:0006417 regulation of translation AnnotationPropagation P GO:0003746 translation elongation factor activity ISA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004096 catalase activity IDA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004096 catalase activity IDA
GO:0005829 cytosol AnnotationPropagation C GO:0045022 early endosome to late endosome transport IMP
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0016209 antioxidant activity IMP
GO:0016310 phosphorylation AnnotationPropagation P GO:0004618 phosphoglycerate kinase activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0016491 oxidoreductase activity IMP
GO:0016310 phosphorylation AnnotationPropagation P GO:0009029 tetraacyldisaccharide 4'-kinase activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008888 glycerol dehydrogenase [NAD+] activity IDA
GO:0006412 translation AnnotationPropagation P GO:0003746 translation elongation factor activity ISA
GO:0006414 translational elongation AnnotationPropagation P GO:0003746 translation elongation factor activity ISA
GO:0006417 regulation of translation AnnotationPropagation P GO:0003746 translation elongation factor activity ISA
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0004340 glucokinase activity IMP
GO:0051156 glucose 6-phosphate metabolic process AnnotationPropagation P GO:0004340 glucokinase activity IMP
GO:0015768 maltose transport AnnotationPropagation P GO:0005363 maltose transmembrane transporter activity IMP
GO:0034219 carbohydrate transmembrane transport AnnotationPropagation P GO:0005363 maltose transmembrane transporter activity IMP
GO:0071897 DNA biosynthetic process AnnotationPropagation P GO:0003887 DNA-directed DNA polymerase activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004345 glucose-6-phosphate dehydrogenase activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008942 nitrite reductase [NAD(P)H] activity ISS