Table of contents

Report

Group: genedb - Dataset: genedb_pfalciparum

SUMMARY

This report generated on 2024-11-03

Header From Original Association File

!gaf-version: 1.0

Contents

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other

MESSAGES

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No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515'

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IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to to 'protein binding ; GO:0005515 or GO:0005488 binding''

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IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC

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IPI should not be used with GO:0003824 catalytic activity or descendents

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No annotations should be made to uninformative high level terms

Messages

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ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

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Taxon-appropriate annotation check

Messages

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Dual species taxon check

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With/From: IC annotations require a With/From GO ID

Messages

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IDA annotations must not have a With/From entry

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IPI annotations require a With/From entry

Messages

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Automatic repair of annotations to merged or obsoleted terms

Messages

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Check for, and filter, annotations made to retracted publications

Messages

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Each identifier in GAF is valid

Messages

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GO aspect should match the term's namespace; otherwise it is repaired to the appropriate aspect

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IEAs should be less than one year old.

Messages

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Obsolete GO_REFs are not allowed

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IBA annotations should ONLY be assigned_by GO_Central and have GO_REF:0000033 as a reference

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Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

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Qualifier: IKR evidence code requires a NOT qualifier

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Check for valid combination of evidence code and GO_REF

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The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

Messages

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Annotations to ISS, ISA and ISO should not be self-referential

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References should have only one ID per ID space

Messages

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Object extensions should conform to the extensions-patterns.yaml file in metadata

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GAF Version 2.0 and 2.1 are converted into GAF Version 2.2

Messages

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Allowed gene product to term relations (gp2term)

Messages

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Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)

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TreeGrafter IEAs should be filtered for GO reference species

other

Predictions

GO:0034204 lipid translocation AnnotationPropagation P GO:0140345 phosphatidylcholine flippase activity ISO
GO:0015914 phospholipid transport AnnotationPropagation P GO:0140345 phosphatidylcholine flippase activity ISO
GO:0032508 DNA duplex unwinding AnnotationPropagation P GO:0043138 3'-5' DNA helicase activity IDA
GO:0044650 adhesion of symbiont to host cell AnnotationPropagation P GO:0046789 host cell surface receptor binding IDA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0045039 protein insertion into mitochondrial inner membrane ISS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation IMP
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:1901475 pyruvate transmembrane transport AnnotationPropagation P GO:0050833 pyruvate transmembrane transporter activity ISS
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0008379 thioredoxin peroxidase activity IDA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0046710 GDP metabolic process AnnotationPropagation P GO:0004385 guanylate kinase activity IDA
GO:0046037 GMP metabolic process AnnotationPropagation P GO:0004385 guanylate kinase activity IDA
GO:0046940 nucleoside monophosphate phosphorylation AnnotationPropagation P GO:0004385 guanylate kinase activity IDA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0006338 chromatin remodeling AnnotationPropagation P GO:0032452 histone demethylase activity IMP
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0006096 glycolytic process AnnotationPropagation P GO:0004743 pyruvate kinase activity IDA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism ISS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0048256 flap endonuclease activity IDA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0006269 DNA replication, synthesis of primer AnnotationPropagation P GO:0003896 DNA primase activity IDA
GO:0044650 adhesion of symbiont to host cell AnnotationPropagation P GO:0046789 host cell surface receptor binding IPI
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport ISS
GO:0031167 rRNA methylation AnnotationPropagation P GO:0008649 rRNA methyltransferase activity IDA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0016020 membrane AnnotationPropagation C GO:0030148 sphingolipid biosynthetic process ISO
GO:0005829 cytosol AnnotationPropagation C GO:0042147 retrograde transport, endosome to Golgi ISS
GO:0032508 DNA duplex unwinding AnnotationPropagation P GO:0043139 5'-3' DNA helicase activity IDA
GO:0032508 DNA duplex unwinding AnnotationPropagation P GO:0043138 3'-5' DNA helicase activity IDA
GO:0032508 DNA duplex unwinding AnnotationPropagation P GO:0043138 3'-5' DNA helicase activity ISS
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism ISS
GO:0030001 metal ion transport AnnotationPropagation P GO:0046873 metal ion transmembrane transporter activity ISO
GO:0098655 monoatomic cation transmembrane transport AnnotationPropagation P GO:0046873 metal ion transmembrane transporter activity ISO
GO:0032508 DNA duplex unwinding AnnotationPropagation P GO:0003678 DNA helicase activity ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0034551 mitochondrial respiratory chain complex III assembly ISO
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0006417 regulation of translation AnnotationPropagation P GO:0045182 translation regulator activity IDA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0008121 ubiquinol-cytochrome-c reductase activity ISM
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0005737 cytoplasm AnnotationPropagation C GO:0030970 retrograde protein transport, ER to cytosol ISS
GO:0042350 GDP-L-fucose biosynthetic process AnnotationPropagation P GO:0050577 GDP-L-fucose synthase activity IDA
GO:0032508 DNA duplex unwinding AnnotationPropagation P GO:0043139 5'-3' DNA helicase activity IDA
GO:0005829 cytosol AnnotationPropagation C GO:0042147 retrograde transport, endosome to Golgi ISS
GO:0005829 cytosol AnnotationPropagation C GO:0006895 Golgi to endosome transport ISS
GO:0006338 chromatin remodeling AnnotationPropagation P GO:0042054 histone methyltransferase activity ISS
GO:0031167 rRNA methylation AnnotationPropagation P GO:0009383 rRNA (cytosine-C5-)-methyltransferase activity ISS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0032508 DNA duplex unwinding AnnotationPropagation P GO:0043138 3'-5' DNA helicase activity IDA
GO:0044650 adhesion of symbiont to host cell AnnotationPropagation P GO:0046789 host cell surface receptor binding IPI
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0042780 tRNA 3'-end processing AnnotationPropagation P GO:0042781 3'-tRNA processing endoribonuclease activity ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:0045039 protein insertion into mitochondrial inner membrane ISS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0042780 tRNA 3'-end processing AnnotationPropagation P GO:0042781 3'-tRNA processing endoribonuclease activity IC
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0034982 mitochondrial protein processing ISS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0044650 adhesion of symbiont to host cell AnnotationPropagation P GO:0046789 host cell surface receptor binding IPI
GO:0032508 DNA duplex unwinding AnnotationPropagation P GO:0043139 5'-3' DNA helicase activity IDA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0016020 membrane AnnotationPropagation C GO:0006684 sphingomyelin metabolic process IDA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation IMP
GO:0005829 cytosol AnnotationPropagation C GO:0042147 retrograde transport, endosome to Golgi ISS
GO:0017121 plasma membrane phospholipid scrambling AnnotationPropagation P GO:0017128 phospholipid scramblase activity IDA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IMP
GO:0042908 xenobiotic transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IMP
GO:0044650 adhesion of symbiont to host cell AnnotationPropagation P GO:0046789 host cell surface receptor binding IPI
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0008137 NADH dehydrogenase (ubiquinone) activity IDA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism ISS
GO:0030001 metal ion transport AnnotationPropagation P GO:0046873 metal ion transmembrane transporter activity TAS
GO:0098655 monoatomic cation transmembrane transport AnnotationPropagation P GO:0046873 metal ion transmembrane transporter activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0044650 adhesion of symbiont to host cell AnnotationPropagation P GO:0046789 host cell surface receptor binding IPI
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0005829 cytosol AnnotationPropagation C GO:0042147 retrograde transport, endosome to Golgi ISS
GO:0006338 chromatin remodeling AnnotationPropagation P GO:0046975 histone H3K36 methyltransferase activity IDA
GO:0006338 chromatin remodeling AnnotationPropagation P GO:0046974 histone H3K9 methyltransferase activity IDA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism TAS
GO:0016567 protein ubiquitination AnnotationPropagation P GO:0004839 ubiquitin activating enzyme activity IDA
GO:0031167 rRNA methylation AnnotationPropagation P GO:0070037 rRNA (pseudouridine) methyltransferase activity ISS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0032508 DNA duplex unwinding AnnotationPropagation P GO:0043139 5'-3' DNA helicase activity IDA
GO:0006338 chromatin remodeling AnnotationPropagation P GO:0042800 histone H3K4 methyltransferase activity IDA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism ISS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0070588 calcium ion transmembrane transport AnnotationPropagation P GO:0008273 calcium, potassium:sodium antiporter activity IDA
GO:0071805 potassium ion transmembrane transport AnnotationPropagation P GO:0008273 calcium, potassium:sodium antiporter activity IDA
GO:0035725 sodium ion transmembrane transport AnnotationPropagation P GO:0008273 calcium, potassium:sodium antiporter activity IDA
GO:0044650 adhesion of symbiont to host cell AnnotationPropagation P GO:0046789 host cell surface receptor binding IPI
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IDA
GO:0042908 xenobiotic transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IDA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM
GO:0044650 adhesion of symbiont to host cell AnnotationPropagation P GO:0046789 host cell surface receptor binding IPI
GO:0005739 mitochondrion AnnotationPropagation C GO:0045039 protein insertion into mitochondrial inner membrane ISS
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0016209 antioxidant activity IDA
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation IMP
GO:0032508 DNA duplex unwinding AnnotationPropagation P GO:0043139 5'-3' DNA helicase activity IDA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity ISM

Predictions (experimental)