Overview

The gene association files ingested from GO Consortium members are shown in the table below. Files are in the GO annotation file format and are compressed using the UNIX gzip utility. Please see the upstream resource information for further details on the annotation set. Any errors or omissions in annotations should be reported by writing to the GO Helpdesk.


Filtered Files

These files are taxon-specific and reflect the work of specific projects, primarily the model organisms database groups, to provide comprehensive, non-redundant annotation files for their organism. All the files in this table have been filtered using the annotation file QC pipeline. A major component to the filtering is the requirement that particular taxon IDs can only be included within the association files provided by specific projects; the current list of authoritative groups and major model organisms can be found below.


Filtered Annotation File Downloads for 2020-05-02 release

Species/Database Entity type Annotations File
Species/Database Entity type Annotations File
Gallus gallus
EBI Gene Ontology Annotation Database (goa)
rna 2125 goa_chicken_rna.gaf (gzip)
Sus scrofa
EBI Gene Ontology Annotation Database (goa)
isoform 74719 goa_pig_isoform.gaf (gzip)
Dictyostelium discoideum
dictyBase (dictyBase)
n/a 59713 dictybase.gaf (gzip)
Mus musculus
Mouse Genome Informatics (mgi)
n/a 360960 mgi.gaf (gzip)
Aspergillus nidulans
Aspergillus Genome Database (aspgd)
n/a 665011 aspgd.gaf (gzip)
Solanaceae
Sol Genomics Network (sgn)
gene 1358 sgn.gaf (gzip)
Sus scrofa
EBI Gene Ontology Annotation Database (goa)
protein 114187 goa_pig.gaf (gzip)
Gallus gallus
EBI Gene Ontology Annotation Database (goa)
complex 25 goa_chicken_complex.gaf (gzip)
Danio rerio
Zebrafish Information Network (zfin)
n/a 168122 zfin.gaf (gzip)
Bos taurus
EBI Gene Ontology Annotation Database (goa)
rna 9883 goa_cow_rna.gaf (gzip)
Multi-species
Encyclopedia of E. coli metabolism (ecocyc)
n/a 53756 ecocyc.gaf (gzip)
Rattus norvegicus
Rat Genome Database (rgd)
n/a 392285 rgd.gaf (gzip)
Saccharomyces cerevisiae
Saccharomyces Genome Database (sgd)
n/a 104942 sgd.gaf (gzip)
Schizosaccharomyces pombe
PomBase (pombase)
n/a 41753 pombase.gaf (gzip)
Multi-species
GeneDB (genedb)
n/a 6188 genedb_pfalciparum.gaf (gzip)
Pseudomonas aeruginosa
Pseudomonas Genome Project (pseudocap)
n/a 3709 pseudocap.gaf (gzip)
Sus scrofa
EBI Gene Ontology Annotation Database (goa)
complex 14 goa_pig_complex.gaf (gzip)
Drosophila melanogaster
FlyBase (fb)
n/a 87919 fb.gaf (gzip)
Homo sapiens
EBI Gene Ontology Annotation Database (goa)
protein 440552 goa_human.gaf (gzip)
Caenorhabditis elegans
WormBase database of nematode biology (wb)
n/a 94519 wb.gaf (gzip)
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa)
isoform 62466 goa_dog_isoform.gaf (gzip)
Bos taurus
EBI Gene Ontology Annotation Database (goa)
protein 146908 goa_cow.gaf (gzip)
Multi-species
GeneDB (genedb)
n/a 6296 genedb_lmajor.gaf (gzip)
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa)
rna 12097 goa_dog_rna.gaf (gzip)
Homo sapiens
EBI Gene Ontology Annotation Database (goa)
complex 1678 goa_human_complex.gaf (gzip)
Bos taurus
EBI Gene Ontology Annotation Database (goa)
complex 12 goa_cow_complex.gaf (gzip)
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa)
complex 0 goa_dog_complex.gaf (gzip)
Bos taurus
EBI Gene Ontology Annotation Database (goa)
isoform 36439 goa_cow_isoform.gaf (gzip)
Multi-species
Reactome - a curated knowledgebase of biological pathways (reactome)
n/a 112815 reactome.gaf (gzip)
Gallus gallus
EBI Gene Ontology Annotation Database (goa)
isoform 23085 goa_chicken_isoform.gaf (gzip)
Sus scrofa
EBI Gene Ontology Annotation Database (goa)
rna 22269 goa_pig_rna.gaf (gzip)
Homo sapiens
EBI Gene Ontology Annotation Database (goa)
isoform 103546 goa_human_isoform.gaf (gzip)
Multi-species
Candida Genome Database (cgd)
n/a 371142 cgd.gaf (gzip)
Gallus gallus
EBI Gene Ontology Annotation Database (goa)
protein 111875 goa_chicken.gaf (gzip)
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa)
protein 100638 goa_dog.gaf (gzip)
Multi-species
GeneDB (genedb)
n/a 19294 genedb_tbrucei.gaf (gzip)
Arabidopsis thaliana
The Arabidopsis Information Resource (tair)
n/a 172051 tair.gaf (gzip)
Homo sapiens
EBI Gene Ontology Annotation Database (goa)
rna 50682 goa_human_rna.gaf (gzip)

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The Gene Ontology Consortium is supported by a P41 grant from the National Human Genome Research Institute (NHGRI) [grant 5U41HG002273-14]. The Gene Ontology Consortium would like to acknowledge the assistance of many more people than can be listed here. Please visit the annotation contributors page for the full list.