Overview

The gene association files ingested from GO Consortium members are shown in the table below. Files are in the GO annotation file format and are compressed using the UNIX gzip utility. Please see the upstream resource information for further details on the annotation set. Any errors or omissions in annotations should be reported by writing to the GO Helpdesk.


Filtered Files

These files are taxon-specific and reflect the work of specific projects, primarily the model organisms database groups, to provide comprehensive, non-redundant annotation files for their organism. All the files in this table have been filtered using the annotation file QC pipeline. A major component to the filtering is the requirement that particular taxon IDs can only be included within the association files provided by specific projects; the current list of authoritative groups and major model organisms can be found below.


Filtered Annotation File Downloads for 2024-01-17 release

Species/Database Entity type Annotations File
Species/Database Entity type Annotations File
Gallus gallus
EBI Gene Ontology Annotation Database (goa)
rna 3279 goa_chicken_rna.gaf (gzip)
Sus scrofa
EBI Gene Ontology Annotation Database (goa)
isoform 75464 goa_pig_isoform.gaf (gzip)
Dictyostelium discoideum
dictyBase (dictyBase)
n/a 81542 dictybase.gaf (gzip)
Mus musculus
Mouse Genome Informatics (mgi)
n/a 348845 mgi.gaf (gzip)
Solanaceae
Sol Genomics Network (sgn)
gene 1358 sgn.gaf (gzip)
Sus scrofa
EBI Gene Ontology Annotation Database (goa)
protein 134789 goa_pig.gaf (gzip)
Gallus gallus
EBI Gene Ontology Annotation Database (goa)
complex 103 goa_chicken_complex.gaf (gzip)
Danio rerio
Zebrafish Information Network (zfin)
n/a 211498 zfin.gaf (gzip)
Bos taurus
EBI Gene Ontology Annotation Database (goa)
rna 11466 goa_cow_rna.gaf (gzip)
Escherichia coli
Encyclopedia of E. coli metabolism (ecocyc)
n/a 63077 ecocyc.gaf (gzip)
Rattus norvegicus
Rat Genome Database (rgd)
n/a 462625 rgd.gaf (gzip)
Saccharomyces cerevisiae
Saccharomyces Genome Database (sgd)
n/a 122309 sgd.gaf (gzip)
Schizosaccharomyces pombe
PomBase (pombase)
n/a 52070 pombase.gaf (gzip)
Plasmodium falciparum
GeneDB (genedb)
n/a 10693 genedb_pfalciparum.gaf (gzip)
Pseudomonas aeruginosa
Pseudomonas Genome Project (pseudocap)
n/a 3625 pseudocap.gaf (gzip)
Sus scrofa
EBI Gene Ontology Annotation Database (goa)
complex 23 goa_pig_complex.gaf (gzip)
Drosophila melanogaster
FlyBase (fb)
n/a 135040 fb.gaf (gzip)
Homo sapiens
EBI Gene Ontology Annotation Database (goa)
protein 638780 goa_human.gaf (gzip)
Caenorhabditis elegans
WormBase database of nematode biology (wb)
n/a 127527 wb.gaf (gzip)
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa)
isoform 70219 goa_dog_isoform.gaf (gzip)
Bos taurus
EBI Gene Ontology Annotation Database (goa)
protein 114919 goa_cow.gaf (gzip)
Leishmania major
GeneDB (genedb)
n/a 9873 genedb_lmajor.gaf (gzip)
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa)
rna 16160 goa_dog_rna.gaf (gzip)
Xenopus
Xenbase (xenbase)
n/a 319516 xenbase.gaf (gzip)
Homo sapiens
EBI Gene Ontology Annotation Database (goa)
complex 2113 goa_human_complex.gaf (gzip)
Bos taurus
EBI Gene Ontology Annotation Database (goa)
complex 36 goa_cow_complex.gaf (gzip)
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa)
complex 2 goa_dog_complex.gaf (gzip)
Bos taurus
EBI Gene Ontology Annotation Database (goa)
isoform 53194 goa_cow_isoform.gaf (gzip)
Schizosaccharomyces japonicus
JaponicusDB (japonicusdb)
n/a 22364 japonicusdb.gaf (gzip)
Multi-species
Reactome - a curated knowledgebase of biological pathways (reactome)
n/a 99671 reactome.gaf (gzip)
Gallus gallus
EBI Gene Ontology Annotation Database (goa)
isoform 68099 goa_chicken_isoform.gaf (gzip)
Sus scrofa
EBI Gene Ontology Annotation Database (goa)
rna 22408 goa_pig_rna.gaf (gzip)
Homo sapiens
EBI Gene Ontology Annotation Database (goa)
isoform 172693 goa_human_isoform.gaf (gzip)
Multi-species
Candida Genome Database (cgd)
n/a 367052 cgd.gaf (gzip)
Gallus gallus
EBI Gene Ontology Annotation Database (goa)
protein 128108 goa_chicken.gaf (gzip)
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa)
protein 138888 goa_dog.gaf (gzip)
Trypanosoma brucei
GeneDB (genedb)
n/a 20229 genedb_tbrucei.gaf (gzip)
Arabidopsis thaliana
The Arabidopsis Information Resource (tair)
n/a 235244 tair.gaf (gzip)
Homo sapiens
EBI Gene Ontology Annotation Database (goa)
rna 63132 goa_human_rna.gaf (gzip)

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The Gene Ontology Consortium is funded by the National Human Genome Research Institute (US National Institutes of Health), grant number HG012212, with co-funding by NIGMS.