The gene association files ingested from GO Consortium members are shown in the table below. Files are in the GO annotation file format and are compressed using the UNIX gzip utility. Please see the upstream resource information for further details on the annotation set. Any errors or omissions in annotations should be reported by writing to the GO Helpdesk.
These files are taxon-specific and reflect the work of specific projects, primarily the model organisms database groups, to provide comprehensive, non-redundant annotation files for their organism. All the files in this table have been filtered using the annotation file QC pipeline. A major component to the filtering is the requirement that particular taxon IDs can only be included within the association files provided by specific projects; the current list of authoritative groups and major model organisms can be found below.
| Species/Database | Entity type | Annotations | File |
|---|---|---|---|
| Species/Database | Entity type | Annotations | File |
|
Gallus gallus
EBI Gene Ontology Annotation Database (goa) |
rna | 0 | goa_chicken_rna.gaf (gzip) |
|
Sus scrofa
EBI Gene Ontology Annotation Database (goa) |
isoform | 58976 | goa_pig_isoform.gaf (gzip) |
|
Dictyostelium discoideum
dictyBase (dictyBase) |
n/a | 59696 | dictybase.gaf (gzip) |
|
Mus musculus
Mouse Genome Informatics (mgi) |
n/a | 355507 | mgi.gaf (gzip) |
|
Aspergillus nidulans
Aspergillus Genome Database (aspgd) |
n/a | 660011 | aspgd.gaf (gzip) |
|
Solanaceae
Sol Genomics Network (sgn) |
n/a | 1362 | sgn.gaf (gzip) |
|
Sus scrofa
EBI Gene Ontology Annotation Database (goa) |
protein | 111807 | goa_pig.gaf (gzip) |
|
Gallus gallus
EBI Gene Ontology Annotation Database (goa) |
complex | 25 | goa_chicken_complex.gaf (gzip) |
|
Danio rerio
Zebrafish Information Network (zfin) |
n/a | 167646 | zfin.gaf (gzip) |
|
Bos taurus
EBI Gene Ontology Annotation Database (goa) |
rna | 8 | goa_cow_rna.gaf (gzip) |
|
Multi-species
Encyclopedia of E. coli metabolism (ecocyc) |
n/a | 53812 | ecocyc.gaf (gzip) |
|
Rattus norvegicus
Rat Genome Database (rgd) |
n/a | 391052 | rgd.gaf (gzip) |
|
Saccharomyces cerevisiae
Saccharomyces Genome Database (sgd) |
n/a | 104980 | sgd.gaf (gzip) |
|
Schizosaccharomyces pombe
PomBase (pombase) |
n/a | 42022 | pombase.gaf (gzip) |
|
Multi-species
GeneDB (genedb) |
n/a | 6199 | genedb_pfalciparum.gaf (gzip) |
|
Pseudomonas aeruginosa
Pseudomonas Genome Project (pseudocap) |
n/a | 3716 | pseudocap.gaf (gzip) |
|
Sus scrofa
EBI Gene Ontology Annotation Database (goa) |
complex | 14 | goa_pig_complex.gaf (gzip) |
|
Multi-species
Plant-Associated Microbe Gene Ontology Interest Group (pamgo) |
n/a | 273 | pamgo_ddadantii.gaf (gzip) |
|
Drosophila melanogaster
FlyBase (fb) |
n/a | 88329 | fb.gaf (gzip) |
|
Homo sapiens
EBI Gene Ontology Annotation Database (goa) |
protein | 432312 | goa_human.gaf (gzip) |
|
Caenorhabditis elegans
WormBase database of nematode biology (wb) |
n/a | 94188 | wb.gaf (gzip) |
|
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa) |
isoform | 19456 | goa_dog_isoform.gaf (gzip) |
|
Bos taurus
EBI Gene Ontology Annotation Database (goa) |
protein | 145819 | goa_cow.gaf (gzip) |
|
Multi-species
GeneDB (genedb) |
n/a | 6307 | genedb_lmajor.gaf (gzip) |
|
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa) |
rna | 3 | goa_dog_rna.gaf (gzip) |
|
Homo sapiens
EBI Gene Ontology Annotation Database (goa) |
complex | 1655 | goa_human_complex.gaf (gzip) |
|
Multi-species
Plant-Associated Microbe Gene Ontology Interest Group (pamgo) |
n/a | 247 | pamgo_atumefaciens.gaf (gzip) |
|
Bos taurus
EBI Gene Ontology Annotation Database (goa) |
complex | 12 | goa_cow_complex.gaf (gzip) |
|
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa) |
complex | 0 | goa_dog_complex.gaf (gzip) |
|
Bos taurus
EBI Gene Ontology Annotation Database (goa) |
isoform | 36258 | goa_cow_isoform.gaf (gzip) |
|
Multi-species
Reactome - a curated knowledgebase of biological pathways (reactome) |
n/a | 107478 | reactome.gaf (gzip) |
|
Multi-species
Plant-Associated Microbe Gene Ontology Interest Group (pamgo) |
n/a | 125 | pamgo_oomycetes.gaf (gzip) |
|
Gallus gallus
EBI Gene Ontology Annotation Database (goa) |
isoform | 22931 | goa_chicken_isoform.gaf (gzip) |
|
Sus scrofa
EBI Gene Ontology Annotation Database (goa) |
rna | 9 | goa_pig_rna.gaf (gzip) |
|
Homo sapiens
EBI Gene Ontology Annotation Database (goa) |
isoform | 102071 | goa_human_isoform.gaf (gzip) |
|
Multi-species
Candida Genome Database (cgd) |
n/a | 358385 | cgd.gaf (gzip) |
|
Gallus gallus
EBI Gene Ontology Annotation Database (goa) |
protein | 111290 | goa_chicken.gaf (gzip) |
|
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa) |
protein | 87328 | goa_dog.gaf (gzip) |
|
Multi-species
GeneDB (genedb) |
n/a | 19308 | genedb_tbrucei.gaf (gzip) |
|
Arabidopsis thaliana
The Arabidopsis Information Resource (tair) |
n/a | 182908 | tair.gaf (gzip) |
|
Homo sapiens
EBI Gene Ontology Annotation Database (goa) |
rna | 4560 | goa_human_rna.gaf (gzip) |
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Biological and Biomedical Ontologies
The Gene Ontology Consortium is supported by a P41 grant
from the National Human Genome Research Institute (NHGRI)
[grant 5U41HG002273-14]. The
Gene Ontology Consortium would like to acknowledge the
assistance of many more people than can be listed
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the annotation contributors page for the full list.