Overview

The gene association files ingested from GO Consortium members are shown in the table below. Files are in the GO annotation file format and are compressed using the UNIX gzip utility. Please see the upstream resource information for further details on the annotation set. Any errors or omissions in annotations should be reported by writing to the GO Helpdesk.


Filtered Files

These files are taxon-specific and reflect the work of specific projects, primarily the model organisms database groups, to provide comprehensive, non-redundant annotation files for their organism. All the files in this table have been filtered using the annotation file QC pipeline. A major component to the filtering is the requirement that particular taxon IDs can only be included within the association files provided by specific projects; the current list of authoritative groups and major model organisms can be found below.


Filtered Annotation File Downloads for 2019-10-07 release

Species/Database Entity type Annotations File
Species/Database Entity type Annotations File
Gallus gallus
EBI Gene Ontology Annotation Database (goa)
rna 0 goa_chicken_rna.gaf (gzip)
Sus scrofa
EBI Gene Ontology Annotation Database (goa)
isoform 58809 goa_pig_isoform.gaf (gzip)
Dictyostelium discoideum
dictyBase (dictyBase)
n/a 59629 dictybase.gaf (gzip)
Mus musculus
Mouse Genome Informatics (mgi)
n/a 354612 mgi.gaf (gzip)
Aspergillus nidulans
Aspergillus Genome Database (aspgd)
n/a 659176 aspgd.gaf (gzip)
Solanaceae
Sol Genomics Network (sgn)
n/a 1370 sgn.gaf (gzip)
Sus scrofa
EBI Gene Ontology Annotation Database (goa)
protein 111477 goa_pig.gaf (gzip)
Gallus gallus
EBI Gene Ontology Annotation Database (goa)
complex 25 goa_chicken_complex.gaf (gzip)
Danio rerio
Zebrafish Information Network (zfin)
n/a 166832 zfin.gaf (gzip)
Multi-species
Plant-Associated Microbe Gene Ontology Interest Group (pamgo)
n/a 26627 pamgo_mgrisea.gaf (gzip)
Bos taurus
EBI Gene Ontology Annotation Database (goa)
rna 8 goa_cow_rna.gaf (gzip)
Multi-species
Encyclopedia of E. coli metabolism (ecocyc)
n/a 53812 ecocyc.gaf (gzip)
Rattus norvegicus
Rat Genome Database (rgd)
n/a 433835 rgd.gaf (gzip)
Saccharomyces cerevisiae
Saccharomyces Genome Database (sgd)
n/a 104654 sgd.gaf (gzip)
Multi-species
Gene Ontology Normal Usage Tracking System (GONUTS) (gonuts)
n/a 1148 gonuts.gaf (gzip)
Schizosaccharomyces pombe
PomBase (pombase)
n/a 41913 pombase.gaf (gzip)
Multi-species
GeneDB (genedb)
n/a 6255 genedb_pfalciparum.gaf (gzip)
Pseudomonas aeruginosa
Pseudomonas Genome Project (pseudocap)
n/a 3716 pseudocap.gaf (gzip)
Sus scrofa
EBI Gene Ontology Annotation Database (goa)
complex 14 goa_pig_complex.gaf (gzip)
Multi-species
Plant-Associated Microbe Gene Ontology Interest Group (pamgo)
n/a 277 pamgo_ddadantii.gaf (gzip)
Drosophila melanogaster
FlyBase (fb)
n/a 88248 fb.gaf (gzip)
Homo sapiens
EBI Gene Ontology Annotation Database (goa)
protein 431586 goa_human.gaf (gzip)
Caenorhabditis elegans
WormBase database of nematode biology (wb)
n/a 93588 wb.gaf (gzip)
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa)
isoform 19376 goa_dog_isoform.gaf (gzip)
Bos taurus
EBI Gene Ontology Annotation Database (goa)
protein 145017 goa_cow.gaf (gzip)
Multi-species
GeneDB (genedb)
n/a 6318 genedb_lmajor.gaf (gzip)
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa)
rna 3 goa_dog_rna.gaf (gzip)
Multi-species
J. Craig Venter Institute (jcvi)
n/a 150048 jcvi.gaf (gzip)
Homo sapiens
EBI Gene Ontology Annotation Database (goa)
complex 1637 goa_human_complex.gaf (gzip)
Multi-species
Plant-Associated Microbe Gene Ontology Interest Group (pamgo)
n/a 249 pamgo_atumefaciens.gaf (gzip)
Bos taurus
EBI Gene Ontology Annotation Database (goa)
complex 11 goa_cow_complex.gaf (gzip)
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa)
complex 0 goa_dog_complex.gaf (gzip)
Oryza sativa
Gramene (gramene)
n/a 49964 gramene_oryza.gaf (gzip)
Bos taurus
EBI Gene Ontology Annotation Database (goa)
isoform 38795 goa_cow_isoform.gaf (gzip)
Multi-species
Reactome - a curated knowledgebase of biological pathways (reactome)
n/a 107478 reactome.gaf (gzip)
Multi-species
Plant-Associated Microbe Gene Ontology Interest Group (pamgo)
n/a 125 pamgo_oomycetes.gaf (gzip)
Gallus gallus
EBI Gene Ontology Annotation Database (goa)
isoform 25208 goa_chicken_isoform.gaf (gzip)
Sus scrofa
EBI Gene Ontology Annotation Database (goa)
rna 9 goa_pig_rna.gaf (gzip)
Homo sapiens
EBI Gene Ontology Annotation Database (goa)
isoform 105428 goa_human_isoform.gaf (gzip)
Multi-species
Candida Genome Database (cgd)
n/a 357492 cgd.gaf (gzip)
Gallus gallus
EBI Gene Ontology Annotation Database (goa)
protein 110674 goa_chicken.gaf (gzip)
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa)
protein 87026 goa_dog.gaf (gzip)
Multi-species
GeneDB (genedb)
n/a 19354 genedb_tbrucei.gaf (gzip)
Arabidopsis thaliana
The Arabidopsis Information Resource (tair)
n/a 195531 tair.gaf (gzip)
Homo sapiens
EBI Gene Ontology Annotation Database (goa)
rna 4559 goa_human_rna.gaf (gzip)

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The Gene Ontology Consortium is supported by a P41 grant from the National Human Genome Research Institute (NHGRI) [grant 5U41HG002273-14]. The Gene Ontology Consortium would like to acknowledge the assistance of many more people than can be listed here. Please visit the acknowledgements page for the full list.