Overview

The gene association files ingested from GO Consortium members are shown in the table below. Files are in the GO annotation file format and are compressed using the UNIX gzip utility. Please see the upstream resource information for further details on the annotation set. Any errors or omissions in annotations should be reported by writing to the GO Helpdesk.


Filtered Files

These files are taxon-specific and reflect the work of specific projects, primarily the model organisms database groups, to provide comprehensive, non-redundant annotation files for their organism. All the files in this table have been filtered using the annotation file QC pipeline. A major component to the filtering is the requirement that particular taxon IDs can only be included within the association files provided by specific projects; the current list of authoritative groups and major model organisms can be found below.


Filtered Annotation File Downloads for 2022-11-03 release

Species/Database Entity type Annotations File
Species/Database Entity type Annotations File
Gallus gallus
EBI Gene Ontology Annotation Database (goa)
rna 2952 goa_chicken_rna.gaf (gzip)
Sus scrofa
EBI Gene Ontology Annotation Database (goa)
isoform 97834 goa_pig_isoform.gaf (gzip)
Dictyostelium discoideum
dictyBase (dictyBase)
n/a 62926 dictybase.gaf (gzip)
Mus musculus
Mouse Genome Informatics (mgi)
n/a 269389 mgi.gaf (gzip)
Solanaceae
Sol Genomics Network (sgn)
gene 1366 sgn.gaf (gzip)
Sus scrofa
EBI Gene Ontology Annotation Database (goa)
protein 116781 goa_pig.gaf (gzip)
Gallus gallus
EBI Gene Ontology Annotation Database (goa)
complex 94 goa_chicken_complex.gaf (gzip)
Danio rerio
Zebrafish Information Network (zfin)
n/a 149685 zfin.gaf (gzip)
Bos taurus
EBI Gene Ontology Annotation Database (goa)
rna 11454 goa_cow_rna.gaf (gzip)
Multi-species
Encyclopedia of E. coli metabolism (ecocyc)
n/a 55232 ecocyc.gaf (gzip)
Rattus norvegicus
Rat Genome Database (rgd)
n/a 408164 rgd.gaf (gzip)
Saccharomyces cerevisiae
Saccharomyces Genome Database (sgd)
n/a 107716 sgd.gaf (gzip)
Schizosaccharomyces pombe
PomBase (pombase)
n/a 41693 pombase.gaf (gzip)
Multi-species
GeneDB (genedb)
n/a 10610 genedb_pfalciparum.gaf (gzip)
Pseudomonas aeruginosa
Pseudomonas Genome Project (pseudocap)
n/a 3627 pseudocap.gaf (gzip)
Sus scrofa
EBI Gene Ontology Annotation Database (goa)
complex 17 goa_pig_complex.gaf (gzip)
Drosophila melanogaster
FlyBase (fb)
n/a 90486 fb.gaf (gzip)
Homo sapiens
EBI Gene Ontology Annotation Database (goa)
protein 564451 goa_human.gaf (gzip)
Caenorhabditis elegans
WormBase database of nematode biology (wb)
n/a 104192 wb.gaf (gzip)
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa)
isoform 69029 goa_dog_isoform.gaf (gzip)
Bos taurus
EBI Gene Ontology Annotation Database (goa)
protein 143590 goa_cow.gaf (gzip)
Multi-species
GeneDB (genedb)
n/a 9901 genedb_lmajor.gaf (gzip)
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa)
rna 16446 goa_dog_rna.gaf (gzip)
Xenopus
Xenbase (xenbase)
n/a 207217 xenbase.gaf (gzip)
Homo sapiens
EBI Gene Ontology Annotation Database (goa)
complex 2226 goa_human_complex.gaf (gzip)
Bos taurus
EBI Gene Ontology Annotation Database (goa)
complex 36 goa_cow_complex.gaf (gzip)
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa)
complex 0 goa_dog_complex.gaf (gzip)
Bos taurus
EBI Gene Ontology Annotation Database (goa)
isoform 46045 goa_cow_isoform.gaf (gzip)
Schizosaccharomyces japonicus
JaponicusDB (japonicusdb)
n/a 30878 japonicusdb.gaf (gzip)
Multi-species
Reactome - a curated knowledgebase of biological pathways (reactome)
n/a 100033 reactome.gaf (gzip)
Gallus gallus
EBI Gene Ontology Annotation Database (goa)
isoform 29751 goa_chicken_isoform.gaf (gzip)
Sus scrofa
EBI Gene Ontology Annotation Database (goa)
rna 22458 goa_pig_rna.gaf (gzip)
Homo sapiens
EBI Gene Ontology Annotation Database (goa)
isoform 156487 goa_human_isoform.gaf (gzip)
Multi-species
Candida Genome Database (cgd)
n/a 346652 cgd.gaf (gzip)
Gallus gallus
EBI Gene Ontology Annotation Database (goa)
protein 57270 goa_chicken.gaf (gzip)
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa)
protein 63419 goa_dog.gaf (gzip)
Multi-species
GeneDB (genedb)
n/a 20212 genedb_tbrucei.gaf (gzip)
Arabidopsis thaliana
The Arabidopsis Information Resource (tair)
n/a 209461 tair.gaf (gzip)
Homo sapiens
EBI Gene Ontology Annotation Database (goa)
rna 56487 goa_human_rna.gaf (gzip)

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The Gene Ontology Consortium is supported by a P41 grant from the National Human Genome Research Institute (NHGRI) [grant 5U41HG002273-14]. The Gene Ontology Consortium would like to acknowledge the assistance of many more people than can be listed here. Please visit the annotation contributors page for the full list.