Overview

The gene association files ingested from GO Consortium members are shown in the table below. Files are in the GO annotation file format and are compressed using the UNIX gzip utility. Please see the upstream resource information for further details on the annotation set. Any errors or omissions in annotations should be reported by writing to the GO Helpdesk.


Filtered Files

These files are taxon-specific and reflect the work of specific projects, primarily the model organisms database groups, to provide comprehensive, non-redundant annotation files for their organism. All the files in this table have been filtered using the annotation file QC pipeline. A major component to the filtering is the requirement that particular taxon IDs can only be included within the association files provided by specific projects; the current list of authoritative groups and major model organisms can be found below.


Filtered Annotation File Downloads for 2019-02-01 release

Species/Database Entity type Annotations File
Species/Database Entity type Annotations File
Gallus gallus
EBI Gene Ontology Annotation Database (goa)
rna 3188 goa_chicken_rna.gaf (gzip)
Sus scrofa
EBI Gene Ontology Annotation Database (goa)
isoform 39819 goa_pig_isoform.gaf (gzip)
Dictyostelium discoideum
dictyBase (dictybase)
n/a 59302 dictybase.gaf (gzip)
Mus musculus
Mouse Genome Informatics (mgi)
n/a 349523 mgi.gaf (gzip)
Aspergillus nidulans
Aspergillus Genome Database (aspgd)
n/a 634197 aspgd.gaf (gzip)
Solanaceae
Sol Genomics Network (sgn)
n/a 1349 sgn.gaf (gzip)
Sus scrofa
EBI Gene Ontology Annotation Database (goa)
protein 140645 goa_pig.gaf (gzip)
Gallus gallus
EBI Gene Ontology Annotation Database (goa)
complex 25 goa_chicken_complex.gaf (gzip)
Danio rerio
Zebrafish Information Network (zfin)
n/a 165869 zfin.gaf (gzip)
Multi-species
Plant-Associated Microbe Gene Ontology Interest Group (pamgo)
n/a 26627 pamgo_mgrisea.gaf (gzip)
Bos taurus
EBI Gene Ontology Annotation Database (goa)
rna 61691 goa_cow_rna.gaf (gzip)
Multi-species
Encyclopedia of E. coli metabolism (ecocyc)
n/a 20810 ecocyc.gaf (gzip)
Rattus norvegicus
Rat Genome Database (rgd)
n/a 385540 rgd.gaf (gzip)
Saccharomyces cerevisiae
Saccharomyces Genome Database (sgd)
n/a 112642 sgd.gaf (gzip)
Multi-species
Gene Ontology Normal Usage Tracking System (GONUTS) (gonuts)
n/a 1137 gonuts.gaf (gzip)
Schizosaccharomyces pombe
PomBase (pombase)
n/a 41488 pombase.gaf (gzip)
Multi-species
GeneDB (genedb)
n/a 6162 genedb_pfalciparum.gaf (gzip)
Pseudomonas aeruginosa
Pseudomonas Genome Project (pseudocap)
n/a 3639 pseudocap.gaf (gzip)
Sus scrofa
EBI Gene Ontology Annotation Database (goa)
complex 11 goa_pig_complex.gaf (gzip)
Multi-species
Plant-Associated Microbe Gene Ontology Interest Group (pamgo)
n/a 304 pamgo_ddadantii.gaf (gzip)
Drosophila melanogaster
FlyBase (fb)
n/a 88693 fb.gaf (gzip)
Homo sapiens
EBI Gene Ontology Annotation Database (goa)
protein 422945 goa_human.gaf (gzip)
Caenorhabditis elegans
WormBase database of nematode biology (wb)
n/a 93694 wb.gaf (gzip)
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa)
isoform 13219 goa_dog_isoform.gaf (gzip)
Bos taurus
EBI Gene Ontology Annotation Database (goa)
protein 118751 goa_cow.gaf (gzip)
Multi-species
GeneDB (genedb)
n/a 6290 genedb_lmajor.gaf (gzip)
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa)
rna 26266 goa_dog_rna.gaf (gzip)
Multi-species
J. Craig Venter Institute (jcvi)
n/a 144693 jcvi.gaf (gzip)
Homo sapiens
EBI Gene Ontology Annotation Database (goa)
complex 1430 goa_human_complex.gaf (gzip)
Multi-species
Plant-Associated Microbe Gene Ontology Interest Group (pamgo)
n/a 183 pamgo_atumefaciens.gaf (gzip)
Bos taurus
EBI Gene Ontology Annotation Database (goa)
complex 8 goa_cow_complex.gaf (gzip)
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa)
complex 0 goa_dog_complex.gaf (gzip)
Oryza sativa
gramene_oryza (gramene)
n/a 47260 gramene_oryza.gaf (gzip)
Bos taurus
EBI Gene Ontology Annotation Database (goa)
isoform 5783 goa_cow_isoform.gaf (gzip)
Multi-species
Reactome - a curated knowledgebase of biological pathways (reactome)
n/a 104059 reactome.gaf (gzip)
Multi-species
Plant-Associated Microbe Gene Ontology Interest Group (pamgo)
n/a 125 pamgo_oomycetes.gaf (gzip)
Gallus gallus
EBI Gene Ontology Annotation Database (goa)
isoform 34816 goa_chicken_isoform.gaf (gzip)
Sus scrofa
EBI Gene Ontology Annotation Database (goa)
rna 15736 goa_pig_rna.gaf (gzip)
Homo sapiens
EBI Gene Ontology Annotation Database (goa)
isoform 102636 goa_human_isoform.gaf (gzip)
Multi-species
Candida Genome Database (cgd)
n/a 290024 cgd.gaf (gzip)
Gallus gallus
EBI Gene Ontology Annotation Database (goa)
protein 89833 goa_chicken.gaf (gzip)
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa)
protein 116536 goa_dog.gaf (gzip)
Multi-species
GeneDB (genedb)
n/a 19135 genedb_tbrucei.gaf (gzip)
Arabidopsis thaliana
The Arabidopsis Information Resource (tair)
n/a 198678 tair.gaf (gzip)
Homo sapiens
EBI Gene Ontology Annotation Database (goa)
rna 40210 goa_human_rna.gaf (gzip)