format-version: 1.2 data-version: go/releases/2022-07-18/imports/pato_import.owl ontology: go/imports/pato_import [Term] id: CL:0000000 relationship: has_part GO:0005634 {gci_filler="PATO:0001908", gci_relation="RO:0000053"} relationship: has_part GO:0005634 {gci_filler="PATO:0001407", gci_relation="RO:0000053"} [Term] id: PATO:0000001 name: quality def: "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities" [] [Term] id: PATO:0000033 name: concentration of def: "A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance." [] synonym: "concentration" EXACT [] is_a: PATO:0002182 ! molecular quality [Term] id: PATO:0000051 name: morphology def: "A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure." [] is_a: PATO:0001241 ! physical object quality [Term] id: PATO:0000052 name: shape def: "A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc)." [] synonym: "relational shape quality" EXACT [] is_a: PATO:0000051 ! morphology [Term] id: PATO:0000141 name: structure def: "A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form." [] synonym: "conformation" BROAD [] synonym: "relational structural quality" EXACT [] is_a: PATO:0000051 ! morphology [Term] id: PATO:0000276 name: brood size def: "A reproductive quality inhering in the young of an animal by virtue of their number." [] synonym: "litter size" RELATED [] is_a: PATO:0001496 ! brood quality [Term] id: PATO:0000411 name: circular def: "A shape quality inhering in a bearer by virtue of the bearer's being such that every part of the surface or the circumference is equidistant from the center." [] synonym: "round" RELATED [] synonym: "rounded" RELATED [] is_a: PATO:0000947 ! elliptic [Term] id: PATO:0000947 name: elliptic def: "A spheroid quality inhering in a bearer by virtue of the bearer's being oval with two axes of symmetry, as produced by a conical section." [] synonym: "ellipse-shaped" EXACT [] synonym: "ellipsoid" EXACT [] synonym: "elliptical" EXACT [] synonym: "oval" RELATED [] synonym: "ovoid" RELATED [] is_a: PATO:0002318 ! superelliptic [Term] id: PATO:0001018 name: physical quality def: "A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities." [] synonym: "relational physical quality" EXACT [] is_a: PATO:0001241 ! physical object quality [Term] id: PATO:0001236 name: process quality def: "A quality which inheres in an process." [] synonym: "quality of a process" EXACT [] synonym: "quality of occurrent" EXACT [] synonym: "quality of process" EXACT [] synonym: "relational quality of occurrent" EXACT [] is_a: PATO:0000001 ! quality disjoint_from: PATO:0001241 ! physical object quality [Term] id: PATO:0001241 name: physical object quality def: "A quality which inheres in a continuant." [] synonym: "monadic quality of a continuant" EXACT [] synonym: "monadic quality of an object" NARROW [] synonym: "monadic quality of continuant" NARROW [] synonym: "multiply inhering quality of a physical entity" EXACT [] synonym: "quality of a continuant" EXACT [] synonym: "quality of a single physical entity" EXACT [] synonym: "quality of an object" EXACT [] synonym: "quality of continuant" EXACT [] is_a: PATO:0000001 ! quality [Term] id: PATO:0001396 name: cellular quality def: "A monadic quality of continuant that exists at the cellular level of organisation." [] is_a: PATO:0070044 ! anatomical structure quality [Term] id: PATO:0001404 name: nucleate quality def: "A cellular quality inhering in a bearer by virtue of bearer's number of nuclei." [] is_a: PATO:0001396 ! cellular quality [Term] id: PATO:0001405 name: anucleate def: "A nucleate quality inhering in a bearer by virtue of the bearer's having no nucleus." [] is_a: PATO:0001404 ! nucleate quality [Term] id: PATO:0001406 name: binucleate def: "A nucleate quality inhering in a bearer by virtue of the bearer's having two nuclei." [] is_a: PATO:0001908 ! multinucleate [Term] id: PATO:0001407 name: mononucleate def: "A nucleate quality inhering in a bearer by virtue of the bearer's having one nucleus." [] is_a: PATO:0002505 ! nucleated [Term] id: PATO:0001408 name: ciliatedness def: "A cellular quality inhering in a bearer by virtue of the bearer's having thin, tail-like projections extending outwards from the cell body." [] is_a: PATO:0001396 ! cellular quality [Term] id: PATO:0001420 name: buoyancy def: "A physical quality inhering in a bearer by virtue of the bearer's disposition to rise or float in a fluid medium such as water or air." [] is_a: PATO:0001018 ! physical quality [Term] id: PATO:0001434 name: reproductive quality def: "An organismal quality inhering in a bearer by virtue of the bearer's ability to produce new life or offspring." [] is_a: PATO:0001995 ! organismal quality [Term] id: PATO:0001496 name: brood quality def: "A reproductive quality inhering in the young of an animal by virtue of the bearer's being cared for at one time." [] is_a: PATO:0001434 ! reproductive quality [Term] id: PATO:0001842 name: acidity def: "A concentration quality inhering in a bearer by virtue of the bearer's containing acid (hydrogen ions)." [] synonym: "pH" EXACT [] is_a: PATO:0000033 ! concentration of [Term] id: PATO:0001873 name: cylindrical def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's exhibiting a consistently-sized round cross section." [] synonym: "rod-like" EXACT [] synonym: "rod-shaped" EXACT [] synonym: "tubulate" NARROW [] is_a: PATO:0002007 ! convex 3-D shape relationship: RO:0015011 PATO:0000411 ! circular [Term] id: PATO:0001908 name: multinucleate def: "A nucleate quality inhering in a bearer by virtue of the bearer's having more than one nucleus." [] is_a: PATO:0002505 ! nucleated [Term] id: PATO:0001995 name: organismal quality def: "A quality that inheres in an entire organism or part of an organism." [] is_a: PATO:0001241 ! physical object quality [Term] id: PATO:0002006 name: 2-D shape def: "A shape that inheres in a 2 dimensional entity, such as a cross section or projection of a 3 dimensional entity." [] synonym: "2-D projection" RELATED [] synonym: "cross-sectional" RELATED [] is_a: PATO:0000052 ! shape [Term] id: PATO:0002007 name: convex 3-D shape def: "A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave." [] is_a: PATO:0002266 ! 3-D shape relationship: RO:0015011 PATO:0002006 ! 2-D shape [Term] id: PATO:0002182 name: molecular quality def: "A quality which inheres in a molecular entity, a single molecule, atom, ion, radical etc." [] synonym: "relational molecular quality" EXACT [] is_a: PATO:0001241 ! physical object quality [Term] id: PATO:0002226 name: subcylindrical def: "A cylindrical shape quality inhering in a bearer by virtue of the bearer's being imperfectly cylindrical or approximately cylindrical." [] is_a: PATO:0001873 ! cylindrical [Term] id: PATO:0002266 name: 3-D shape def: "A shape that inheres in a 3 dimensional entity." [] is_a: PATO:0000052 ! shape [Term] id: PATO:0002309 name: fiber shaped def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's exhibiting a by virtue of the bearer's exhibiting a consistently sized and approximately round cross-section along its length, which is many times larger than its diameter." [] is_a: PATO:0002226 ! subcylindrical [Term] id: PATO:0002318 name: superelliptic def: "A shape constituting a transition between a rectangle and a circle; a closed curve, of which the circle and ellipse are special cases, whose parametric equation is x = a.cos2/rt, y = b.cos2/rt" [] synonym: "Lamé curve" EXACT [] is_a: PATO:0002006 ! 2-D shape [Term] id: PATO:0002487 name: single organismal process quality def: "A quality inhering in a process by virtue of that process having exactly one organism as a participant." [] is_a: PATO:0001236 ! process quality [Term] id: PATO:0002505 name: nucleated def: "A nucleate quality inhering in a bearer by virtue of the bearer's having one or more nucleus." [] is_a: PATO:0001404 ! nucleate quality [Term] id: PATO:0015006 name: polymeric def: "A quality inhering in a structure by virtue of it consisting of many of repeated, similar or identical subunits, arranged in some orderly array." [] is_a: PATO:0000141 ! structure [Term] id: PATO:0070044 name: anatomical structure quality def: "A quality of continuant that exist at the anatomical level of organisation and anything under it. This includes, but is not limited to, cells , tissues, and components." [] is_a: PATO:0001241 ! physical object quality [Typedef] id: RO:0000053 xref: RO:0000053 [Typedef] id: RO:0000057 xref: RO:0000057 [Typedef] id: RO:0002180 xref: RO:0002180 [Typedef] id: RO:0015011 xref: RO:0015011 [Typedef] id: has_part name: has_part xref: BFO:0000051 [Typedef] id: part_of name: part_of xref: BFO:0000050